Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73140 536 / 0 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01360 358 / 1e-120 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 354 / 1e-118 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 341 / 3e-114 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 330 / 7e-110 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 322 / 2e-106 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G38320 317 / 7e-105 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT2G40320 315 / 4e-104 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT5G01620 303 / 6e-99 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT3G54260 231 / 3e-72 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028141 [exp] 815 / 0 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 352 / 2e-118 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 344 / 2e-115 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028974 [exp] 343 / 2e-114 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 339 / 4e-113 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 331 / 6e-110 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10009839 [exp] 314 / 2e-103 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 313 / 5e-103 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10022676 [exp] 305 / 3e-100 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G376700 [exp] 572 / 0 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 362 / 3e-122 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187500 [exp] 339 / 2e-113 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 339 / 1e-112 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 337 / 9e-112 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 335 / 9e-112 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 332 / 2e-110 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 327 / 2e-108 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G125600 [exp] 319 / 3e-105 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.010G187300 [exp] 303 / 8e-99 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10042845 pacid=23181868 polypeptide=Lus10042845 locus=Lus10042845.g ID=Lus10042845.BGIv1.0 annot-version=v1.0 ATGATCCAAACATTAGTACACGAACATGGCGGCCGACTCCCCAACGTTCAATTCATCACAGCCATCGCCCTCGCCTCCATCCTTGTACTTGGAACCGCCC GCGTAGTGTTTGACATCTCCAAGACCACCAACAGCTACATCTTCACTGCTCTCTACGAAACCACCAATCCGCCGCCAGTAGTGTTCGTTTCTCCTGAGGA TCGCCGGTCGTTCCGGCCGGAGACGTGCGACGTGTTCGAAGGAGAATGGGTGTGGGACAACGTGACGTACCCACTGTACAGGGAGGACAGCTGTCCTTAC CTTGTGAAGCAGACCACCTGCGGACGAAACGGGCGTCCCGACGATTCGTACCGGAACTGGAGGTGGCAGCCCGGCGGCGGGGGAGGTTGCGCCGCCTTGC CGGATTTTGATGCGGCGAAGTTGTTGGATGTTTTGAGAGGGAAGAGGGTGATGTTTGTTGGGGATTCGGTGCAGAGGAGTCAGTTTGAGTCTATGGTTTG TATGATTCAATCGGTTATTCCGGCTAGCGAGAAATCTTTTCATAGGGTTCCGCCGATGAAGATCTTCAAAGCAATGGAATGGAACGTGACGATCGAGTAC TATTGGGCACCTTTCATTGTGGAATCGATCTCAGACCATGCGACAAACCACACCGTACATAAACGACTGGTGAATCTTGACGCCATCTCCAAGCATGGCA GCACCTGGAGATTAGCTGATGTTCTCATCTTCGAAAGCTACGTTTGGTGGATGCACAGCCCTTTCATTAACGCCACTTACGGATCAACTGGGCACATTCA GGAATACGAAGTGGCAGTAGCATACAAGCTAGCAATGGAAACATGGGCAAACTGGGTGAAAAGCCACATTAACCCTCTCAAGCAGTCCGTCTTCTTCATG AGCATGTCCCCCACACATCTGTGGAATTGGGAATGGGGAGGCGGAAACGATGGAAACTGCTTCAACGAAACATACCCGATCGAACCCGGTCTATCGTATT GGGGAACCGGCTCGAATACCCGAATAATGAAAATCCTCGGGGATACCATACGGGAACTGCAGCAAGCTATAAACGTGACGTTCCTGAATATAACTCAGTT GTCCGAGTACAGAAAAGACGGGCACACCGGGATATACGGAGAGCGTAAAGGCAAGCTCCTCACGAAAGAAGAACGAGCTGACCCGAACCATTTTGCCGAC TGTATCCACTGGTGCTTGCCCGGAGTTCCGGACACGTGGAACCACATTTTGTATGCTTATTTGGTGCATAATCATCGTAACTAA
AA sequence Show only first row Show all	>Lus10042845 pacid=23181868 polypeptide=Lus10042845 locus=Lus10042845.g ID=Lus10042845.BGIv1.0 annot-version=v1.0 MIQTLVHEHGGRLPNVQFITAIALASILVLGTARVVFDISKTTNSYIFTALYETTNPPPVVFVSPEDRRSFRPETCDVFEGEWVWDNVTYPLYREDSCPY LVKQTTCGRNGRPDDSYRNWRWQPGGGGGCAALPDFDAAKLLDVLRGKRVMFVGDSVQRSQFESMVCMIQSVIPASEKSFHRVPPMKIFKAMEWNVTIEY YWAPFIVESISDHATNHTVHKRLVNLDAISKHGSTWRLADVLIFESYVWWMHSPFINATYGSTGHIQEYEVAVAYKLAMETWANWVKSHINPLKQSVFFM SMSPTHLWNWEWGGGNDGNCFNETYPIEPGLSYWGTGSNTRIMKILGDTIRELQQAINVTFLNITQLSEYRKDGHTGIYGERKGKLLTKEERADPNHFAD CIHWCLPGVPDTWNHILYAYLVHNHRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	0	1
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	1.0	0.9845
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	2.4	0.9653
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	4.9	0.9605
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	5.5	0.9640
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	6.0	0.9510
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	7.4	0.9596
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	7.9	0.9558
AT2G32240			unknown protein		Lus10010464 [exp]	9.7	0.9091
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	9.8	0.9408
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	10.1	0.9576

Compare expression of checked genes

Lus10042845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.