Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44450 419 / 4e-148 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028142 [exp] 555 / 0 AT5G44450 418 / 4e-148 methyltransferases (.1) Lus10042832 [exp] 300 / 1e-103 AT5G44450 216 / 2e-70 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157500 [exp] 459 / 1e-163 AT5G44450 424 / 6e-150 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05891 [flax] [poplar] Methyltransf_PK AdoMet dependent proline di-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042846 pacid=23181744 polypeptide=Lus10042846 locus=Lus10042846.g ID=Lus10042846.BGIv1.0 annot-version=v1.0 ATGTGGAACCTGGCGCCGCCCGTCGCCGTCGTTCCTACTCTTTACCCTCACCGTTTCACTTCCGCTCGCTCCTATTCTGCTGTGGACAGCTCCGAGTTCT CAGTTAGAGCTTCAGGGATGGAGGCAGCCGGACTTGATTCCGAAGGCCGTCAGTTCAGGAGCCCGGACGAGATGTGGACAGAATACACCGGCGATGACTC AAAGAAGCATCAGTGGTACCACGACGGTGTTTCTTACTGGCAAGGCGTAGAGGCGTCGGTGGATGGGGTTTTGGGGGGTTATGGACATGTCAACGATGCC GATGTGAAGGACAGCGATGATTTCATCAAGAGCCTTTTCTCTGAGCTCTTTCTTGACGGTGGAAGAAACCGGCACCTTGTTGCTCTTGATTGCGGCTCAG GGGTTGGGAGAATCACCAAAAATCTTCTATTAAAGCATTTCAATGAGGTTGATCTTCTCGAGCCGGTATCGCATTTTTTGGATGCTGCGCGTGCAAGTTT GAGCGGTGAAACTCTGATGGCGGAATCTGATGAACACAAGGCTAGCAACTTCTTCTGTGTTCCACTTCAGGAATTCACACCACAGGCAGCAAGATACGAT GTGATCTGGGTTCAGTGGTGTATCGGTCATCTCACAGACGATGACTTAATCTCGTTTTTTAGTAGAGCCAAGGCTGGCCTCAAGCCTGGCGGGTTTTTTG TGTTGAAAGAAAACATTGCGAAAAGTGGGTTTGTATTGGACAAGGATGATAGAAGTATCACTAGATCTGATTTGTACTTCAAAGATCTTTTTCGCCGATG TGGACTTCATCTGTACAAAACAAAGGATCAAAGAGGATTTCCAAAGGAACTATTTGCTGTGAAGATGTATGCTTTGACCACCGATGTGGCAAAGAGAATC GGCAAGACCAGATCAAAACAGCAAGCTAACAGGCCTGGAATAATCCATTGA
AA sequence Show only first row Show all	>Lus10042846 pacid=23181744 polypeptide=Lus10042846 locus=Lus10042846.g ID=Lus10042846.BGIv1.0 annot-version=v1.0 MWNLAPPVAVVPTLYPHRFTSARSYSAVDSSEFSVRASGMEAAGLDSEGRQFRSPDEMWTEYTGDDSKKHQWYHDGVSYWQGVEASVDGVLGGYGHVNDA DVKDSDDFIKSLFSELFLDGGRNRHLVALDCGSGVGRITKNLLLKHFNEVDLLEPVSHFLDAARASLSGETLMAESDEHKASNFFCVPLQEFTPQAARYD VIWVQWCIGHLTDDDLISFFSRAKAGLKPGGFFVLKENIAKSGFVLDKDDRSITRSDLYFKDLFRRCGLHLYKTKDQRGFPKELFAVKMYALTTDVAKRI GKTRSKQQANRPGIIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44450			methyltransferases (.1)		Lus10042846 [exp]	0	1
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Lus10007238 [exp]	2.8	0.6453
					Lus10002271 [exp]	6.0	0.6477
AT4G24900			unknown protein		Lus10024906 [exp]	14.1	0.6197
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	14.2	0.6457
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	18.7	0.6309
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10024262 [exp]	23.7	0.6474
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	26.3	0.6413
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	26.5	0.6070
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	28.1	0.6298
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	28.6	0.6213

Compare expression of checked genes

Lus10042846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.