Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78680 479 / 6e-170 ATGGH2 gamma-glutamyl hydrolase 2 (.1.2) AT1G78660 477 / 2e-169 ATGGH1 gamma-glutamyl hydrolase 1 (.1.2.3) AT1G78670 429 / 2e-150 ATGGH3 gamma-glutamyl hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028143 [exp] 740 / 0 AT1G78680 477 / 4e-169 gamma-glutamyl hydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387100 [exp] 556 / 0 AT1G78680 501 / 2e-178 gamma-glutamyl hydrolase 2 (.1.2) Potri.003G026800 [exp] 556 / 0 AT1G78680 501 / 8e-179 gamma-glutamyl hydrolase 2 (.1.2) Potri.011G107600 [exp] 544 / 0 AT1G78680 489 / 5e-174 gamma-glutamyl hydrolase 2 (.1.2) Potri.012G110400 [exp] 537 / 0 AT1G78680 478 / 1e-168 gamma-glutamyl hydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF07722 [flax] [poplar] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Lus10042847 pacid=23182036 polypeptide=Lus10042847 locus=Lus10042847.g ID=Lus10042847.BGIv1.0 annot-version=v1.0 ATGCCCTCCAACGTTGTCTCTAATTCCCTCGCCGCCGGCGTCGACTTCTCCAACGACGCAGCCTCCCGCTCTTCTTCTTCTTCTTCTCCTCCCTCCACCC TATCCGGTACCTCCATCGCCTCCTCTTCCAACTCTGAGCTGCCGGAGATGTGGAATTACTTGTGGATCCCTTTCCTCCTTTCCTTTTCCAAGGAATTAGG CGTGGTCAAAGCCTCAGATGATGCTTTCCGGTCAACGTCTGTTCTTCGGAGCCAACTGTCGGATGGCTTCTCAGCTTCCGATGGCTCGGTTCCTAAGTGT CCTGCGCTGAACCCCAATCTTAACTACCGGCCGGTGATTGGAATTGTGAGTCATCCTGGCGATGGTGCCTCCGGTAGGCTGAGTAACGCCACCAATGCGT CGTATATCGCAGCGTCGTACGTCAAGTTCGTTGAATCCGCTGGCGCACGCGTGATTCCGCTTATCTACACCGACCCTGCAGACGTTCTTTTCCAGAAGCT TGATTTAGTGAATGGTGTACTCTTCACCGGAGGTTGGGCTAAGAAGGGTTTGTACTTCGACCGGGTTAAGCAAATTTTTGAGAAAGCTTTGGCCAAGAAT GATGCTGGTCACCACTTCCCAGTGTATGCCATCTGCTTGGGTTTTGAACTCTTGACGATGATTGTCAGTAAGGACAATAACATTCTGGAAACTTTTAGTG GCAAGGATCAAGCTTCCTCTGTGCAGTTTGTGAAAAATATAAATACTGAAGGAACTTTGTTTGAAAGGTTCCCTCCTAGTCTGCTTGAAAAAATGAGTAC AGAATGCCTCGTTATGCAAAACCATCAATATGGCATCTCACCTGAACGGCTTCTGGGAAACACTGATCTTTCAAGTTTCTTCAAAATCTTGACAACAAGT ACAGATGAACATGATGAGGTCTATGTATCGACGGTACAAGCATCCAATTATCCAGTGACTGGATTCCAATGGCATCCTGAGAAAAATGCATTTGAATGGG GTCTGTCGATGATTCCGCATTCAGATGATGCCATTCAAGTAACTCAGAATGTTGCGAATTATTTTATCAGTGAAGCTAGGAAGTCAGTGAATAGACCCTC TGCATCAACAGTGCTGGAGAATCTGATATACAACTACAGCCCAACATACTGTGGGAAGGCCGGGAAAGGGTATGATGAAGTTTACATATTTACTTGA
AA sequence Show only first row Show all	>Lus10042847 pacid=23182036 polypeptide=Lus10042847 locus=Lus10042847.g ID=Lus10042847.BGIv1.0 annot-version=v1.0 MPSNVVSNSLAAGVDFSNDAASRSSSSSSPPSTLSGTSIASSSNSELPEMWNYLWIPFLLSFSKELGVVKASDDAFRSTSVLRSQLSDGFSASDGSVPKC PALNPNLNYRPVIGIVSHPGDGASGRLSNATNASYIAASYVKFVESAGARVIPLIYTDPADVLFQKLDLVNGVLFTGGWAKKGLYFDRVKQIFEKALAKN DAGHHFPVYAICLGFELLTMIVSKDNNILETFSGKDQASSVQFVKNINTEGTLFERFPPSLLEKMSTECLVMQNHQYGISPERLLGNTDLSSFFKILTTS TDEHDEVYVSTVQASNYPVTGFQWHPEKNAFEWGLSMIPHSDDAIQVTQNVANYFISEARKSVNRPSASTVLENLIYNYSPTYCGKAGKGYDEVYIFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	0	1
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	1.0	0.9035
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	7.9	0.8558
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	9.9	0.8627
AT1G56423			unknown protein		Lus10031415 [exp]	10.2	0.8722
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	13.4	0.8315
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	14.4	0.8718
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	14.8	0.8595
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	17.3	0.8849
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10030704 [exp]	17.5	0.8607
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	18.2	0.8691

Compare expression of checked genes

Lus10042847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.