Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 736 / 0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 224 / 1e-65 Calcium-binding EF-hand family protein (.1) AT1G29025 218 / 3e-63 Calcium-binding EF-hand family protein (.1) AT2G34020 217 / 2e-62 Calcium-binding EF-hand family protein (.1) AT2G34030 196 / 5e-55 Calcium-binding EF-hand family protein (.1) AT1G55720 56 / 4e-08 ATCAX6 cation exchanger 6 (.1) AT1G55730 55 / 8e-08 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 54 / 2e-07 ATCAX2, CAX2 cation exchanger 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028144 [exp] 720 / 0 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 530 / 0 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 422 / 6e-142 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10034853 [exp] 59 / 1e-08 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 58 / 1e-08 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10032889 [exp] 52 / 1e-06 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027136 [exp] 49 / 6e-06 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10006068 [exp] 46 / 9e-05 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375500 [exp] 718 / 0 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 339 / 2e-109 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 269 / 3e-81 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 262 / 3e-78 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.011G166900 [exp] 52 / 9e-07 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.001G469800 [exp] 49 / 1e-05 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 46 / 7e-05 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10042848 pacid=23181890 polypeptide=Lus10042848 locus=Lus10042848.g ID=Lus10042848.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCTAGCTCCAAACCCCAATTCCCCTCTCTGTGCCTCCTCCTCCTCTTCTTCCTCTCCGTTACCATCGTAGCCGTCCAGTCTCGATCTCTTC CCGAACCTTCTGATCTCCTCTCCGATGGCCAAGACCACCACCAGTCATCCCCTGATTATCTCCGCATCCACCGCTTCTCCACCGCCGAGCCCGTGGAGGA GTCTTGCGAGCAATCCTATGGTTTCTTACCCTGCACCACCACCGCCCTTGGTAACTCCTTCTTGATTATCGTCTATGGTTACCTCATGTTCTTGGCCGCT ACTTACTTATCCAGCGGCAGCGAGCTGCTCCTCGAGATTCTCGGTCCTGGAATTGTTGGCGGTCTCTTTCTCCCTGCTCTTGGCGCGCTCCCTGATGCCA TGCTCATCCTTGTGTCTGGGCTTTCTGGGAGTGCAGAGACTGCTCAAAGTCAAGTCTCTGTTGGGATGGGTTTGCTGGCTGGCTCAACTGTCATGCTTCT TACCATTATTTGGGGATCTTGCATCGTTGTCGGCAAGTGCGATATCAGGGAGTCGAATAATATTGCCATTGATGGCCAGAATACCAGAGGATTCGACCTA ACTGGTTCTGGTGTCAGTACTGATATTTGGACTTGTTATGCTGCAAGGATAATGGCTCTCTCCGTTATCCCATTTGTCATTGTTCAGTCGCCACAAATGC TTCATACACCTGCTGCAAGGCAGGTGGCCGTCTTGATTGGCCTTATTGTATCTCTTACGATGCTGGTTTCTTATTGCGTCTACCAGGTCTTTCAACCATG GGTTCAGAGAAGAAGACTGGCTTTTGCGAAGCATAAACATGTGATATCTGGAATTTTGAGACATTTGAAACAGCGTTCCCTTGGGAGGCTTCTGGATGAT GAGGGTCAACCCGACACAGATGTCATAAGAAAGCTGTTTGGAACAGTTGATCAAGATAAAGATAATTATGTCTCAGCATCTGAACTGAAAGCACTAATTA TAGGAATAACTTTTGAAGAAGTGGACTTTGATAGGGATGATGCTGTGTCGAAATTGATGAGCGACTTCGATACGTCACTTGACGCAAAGATCGACGAGAA TGAGTTTATTCATGGTATAACAAAATGGCTTAATGAGGCGAAGGGAACAGGACCTGCAGCTCCTGATGCTGGTCCTCGGACAATGAAGTTCATAAATGAT TTCCACGACCAAACAAAGAGAGAGCATGCTTTGCTGGGACCGGAAGAGCGCACGGTGGAGAGTGATGAGGTCGCCGAGGAAGTTGAAAATCCAAAGTGGA TCACCTTTAAGGCAGTGTTGATGTTGCTGTTAGGGACAGCCATCGCTGGTGCATTTGCAGATCCCCTAGTAGACGCGGTTGACAACTTCTCAGCTGCAAC AAGTATTCCTACTTTCTTTATCTCCTTCATTGCCCTGCCTTTAGCCACAAACTCCAGCGAAGCAGTTTCCGCAATAATATTTGCGACCCGTAAGAAGTTC AGGACAGCATCATTGACATTCTCGAGGTTCGTGTTCTCTTTTTCATTGACATTCTCCGAGTTATACGGGGCGGTAACGATGAACAATGTTCTGTGCCTAT CGGTGTTCTTGGGGATCGTGTACGCAAGGGGATTGGTTTGGGACTTCTCATCAGAGGTGCTGGTTATCCTAATAGTGTGTCTGGTGACGGCTGCCTTTGC AAGCTTCCGAACCACATTCCCTCTTTGGACTGCTTCAATCGCTTTCCTGCTTTACCCATTCTCCCTGGCGCTGGTATATGTTCTTGATTATGTCTTTGGT TGGTCGTAG
AA sequence Show only first row Show all	>Lus10042848 pacid=23181890 polypeptide=Lus10042848 locus=Lus10042848.g ID=Lus10042848.BGIv1.0 annot-version=v1.0 MALPSSKPQFPSLCLLLLFFLSVTIVAVQSRSLPEPSDLLSDGQDHHQSSPDYLRIHRFSTAEPVEESCEQSYGFLPCTTTALGNSFLIIVYGYLMFLAA TYLSSGSELLLEILGPGIVGGLFLPALGALPDAMLILVSGLSGSAETAQSQVSVGMGLLAGSTVMLLTIIWGSCIVVGKCDIRESNNIAIDGQNTRGFDL TGSGVSTDIWTCYAARIMALSVIPFVIVQSPQMLHTPAARQVAVLIGLIVSLTMLVSYCVYQVFQPWVQRRRLAFAKHKHVISGILRHLKQRSLGRLLDD EGQPDTDVIRKLFGTVDQDKDNYVSASELKALIIGITFEEVDFDRDDAVSKLMSDFDTSLDAKIDENEFIHGITKWLNEAKGTGPAAPDAGPRTMKFIND FHDQTKREHALLGPEERTVESDEVAEEVENPKWITFKAVLMLLLGTAIAGAFADPLVDAVDNFSAATSIPTFFISFIALPLATNSSEAVSAIIFATRKKF RTASLTFSRFVFSFSLTFSELYGAVTMNNVLCLSVFLGIVYARGLVWDFSSEVLVILIVCLVTAAFASFRTTFPLWTASIAFLLYPFSLALVYVLDYVFG WS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	0	1
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032365 [exp]	2.0	0.7766
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	8.2	0.7773
AT1G22790			unknown protein		Lus10028733 [exp]	12.4	0.7193
AT1G11220			Protein of unknown function (D...		Lus10011239 [exp]	12.6	0.7325
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	13.4	0.7556
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	13.7	0.7361
AT4G29240			Leucine-rich repeat (LRR) fami...		Lus10012929 [exp]	15.4	0.7626
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	16.9	0.7221
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	21.3	0.7625
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	24.4	0.7574

Compare expression of checked genes

Lus10042848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.