Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 239 / 4e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 219 / 5e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 203 / 7e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 175 / 7e-49 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 108 / 2e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 104 / 9e-24 GLIP5 GDSL-motif lipase 5 (.1) AT3G14225 94 / 2e-20 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G20120 91 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75930 89 / 5e-19 EXL6 extracellular lipase 6 (.1) AT5G41890 89 / 1e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028145 [exp] 620 / 0 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028146 [exp] 360 / 2e-116 ND 41 / 0.002 Lus10003253 [exp] 237 / 2e-71 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 230 / 1e-68 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 176 / 2e-50 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 95 / 1e-20 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 93 / 5e-20 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017946 [exp] 89 / 2e-19 ND / Lus10013185 [exp] 91 / 5e-19 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237000 [exp] 258 / 2e-79 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 241 / 8e-73 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 235 / 6e-71 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 216 / 5e-64 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 201 / 4e-58 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 146 / 2e-39 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G134701 [exp] 99 / 5e-22 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.003G071500 [exp] 98 / 1e-21 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.017G134601 [exp] 97 / 2e-21 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.008G127100 [exp] 96 / 6e-21 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10042849 pacid=23181909 polypeptide=Lus10042849 locus=Lus10042849.g ID=Lus10042849.BGIv1.0 annot-version=v1.0 ATGGCTCCAGAGGATGATGAAACCACCCACAGCATGCAGAACTATTCCAACAACAGCGGCGGAGGGAGTCGCATGGGAAGTAATGGTCGACCAACGAAGA AACAAAGGCAAAAGAAAGTTCCACAGAGAGGACTTGGAGTTGCAGAATTGGAAAGGATCCGTCTTGAAGAACAGCAACATCATCATCATCCTCAGACAAC ACTAGCACGTCCACCAATGGAATCCAACCAAACTTCATGCACTACATCTTCAACTTTCCAATCATTTGATCATCTGTCGTCTCAGAAGAAGAAGTTGACA AATTTAGAAAACATGAACAATAAGTATGGTAGCAGTAGCAATCATTATAATTCGTCATCCTCCATTCCACTGTCGACACAAACTTGCTGGCAGCATCGAC CGGAAAAAAGAAGAGCAAGTATTTGTGATTCAGATATGATGATGCCCCCATGGAATCCGACCTCCTCCAGCTCCAACAGCACTGCATTTCCTTTATGGCT AGAGCCACTTCACAGAGTAGAGTATCAACATCATCGTCAGCCAATATTGCCACCTTCTTCTGTTTCTTCTTCAAACTCCTCAAAGATGAATGTTCAAGTA CCCAAGGCGTGTAACCGATCATCATCATCATCAACAGGAATCAGAAATCACCAAATGGAGGCTTTTTCAAACAAAAGTTACTGTTCTTACAACAAGAACA ACTTTTCAACAGCTTCAGAAGAAGGGGATCATCGAAATAAGCTTGCATTTACAGCACAGTCCAGTAGTATTGGGATTAAAAGACCATATCATCATCATCA TCATCATCATCAAGACAACAATTGCATAGGTGGGAGTGGAAATGACAATACTACCCTTACTCCTCCTGCTCCACATTTCATGTACCACCACAACAACAAC AACAACAGTAAGCAACTCCTCCCATCTGTAGTTCATCATCATCATCACCACGAATCTCCTTCATCTTTCAATTTCGGGTCGGGCCCTGTTTTCAACTTCT CTTCCCACCCTCCCCCCTTTTTCAGAGATGGATGTTCGAGTTGGAACGTGATGAGATGGCCGAGCGATTCGAGAGAGAGCGATGGGATGGGATTCTCTAC GGACTACCTCACCACTAATACTCTTGCTCCAACAACTGAAGCAGCCACCACAACAGGAGGAGGAGCAAGAGTGCTGTGTGGCAGTTCGAGAGAAGCTTTG ACGACTTCCCGGCGAGCAAAGAGGGGCGCACGTCAGCACCACCACCTTCACAATGGCCACGCTAAGCTCTTTGTTTTCGGGGACTCTTACGCCGACACTG GAAATTTCGAGCGACGCAATGGCTCCTGGTTGCCGCCTTATGGGGTCACTTTCCCCGGAGTCCCCGCCGGCCGCTTTTCCGACGGCCGCGTCCTCACAGA TTACATCGCTGATTTCCTTGGGATAAAGAGTCCGATTGCATACCAACAAATAAGAGGTGAGACGGGCAAAGAACAACTCAAGTGGGGAGTAAATTTCGCA CACGGTGGGACCGGAGTCTTAAGCTCCATATCAAGGGGCCCCATCATTGGCAAACAAATCACTCAACTCCGGCAGCTCATACGCCACCGTTTCTACAATC AGACTGACCTCGACAATTCCGTCGCCGTCGTTGCCGCCTCCGGCAACGATTACAAAGGCGCCACATTCCAGAATGTGACGAAGTTGACGAGGAGGATAAT AAAGGAGTTGAAGGTAGACCTTAGACGAATCCCTGAAGAATTAGGGATCCGGAAAGTAGGAGTTTTACTAATGCAGCCGGCGGGATGCTTGCAGCAAAGC GTAGGGCCTTCAGCGATGTATAGCTCCAAATGCAACGAAACTTACAACGTTGCCATCCGTAGGCATAACAAGCTGTTGAGGGAAGCCGTCCGAGATTTGA ACTTTAAACGACGACGAACCAGGAACCATAGCTTTGTCGTTTTGGATATGTTCAAGGCATTCACCGTTGCACTCGAGGAGCATAAATACCAGACGGGCAG GGCAGAGTACAAGAATCCGCTGAAGCCATGCGTGAGTACGGAGAAGGGGAAATATGCGTGTACTCCTCAGAATGCACAATTAAGGGACTATAGGGTGTGT AAACACCCAGAGCTGTCCTTCTTTGATTGTGATCATCCTTCTCAAAATGGCTGGAAGTCTATTTACTTGGCTTTGCACCACTCCCTCCACCAACTTTATC ACTCTAATTAG
AA sequence Show only first row Show all	>Lus10042849 pacid=23181909 polypeptide=Lus10042849 locus=Lus10042849.g ID=Lus10042849.BGIv1.0 annot-version=v1.0 MAPEDDETTHSMQNYSNNSGGGSRMGSNGRPTKKQRQKKVPQRGLGVAELERIRLEEQQHHHHPQTTLARPPMESNQTSCTTSSTFQSFDHLSSQKKKLT NLENMNNKYGSSSNHYNSSSSIPLSTQTCWQHRPEKRRASICDSDMMMPPWNPTSSSSNSTAFPLWLEPLHRVEYQHHRQPILPPSSVSSSNSSKMNVQV PKACNRSSSSSTGIRNHQMEAFSNKSYCSYNKNNFSTASEEGDHRNKLAFTAQSSSIGIKRPYHHHHHHHQDNNCIGGSGNDNTTLTPPAPHFMYHHNNN NNSKQLLPSVVHHHHHHESPSSFNFGSGPVFNFSSHPPPFFRDGCSSWNVMRWPSDSRESDGMGFSTDYLTTNTLAPTTEAATTTGGGARVLCGSSREAL TTSRRAKRGARQHHHLHNGHAKLFVFGDSYADTGNFERRNGSWLPPYGVTFPGVPAGRFSDGRVLTDYIADFLGIKSPIAYQQIRGETGKEQLKWGVNFA HGGTGVLSSISRGPIIGKQITQLRQLIRHRFYNQTDLDNSVAVVAASGNDYKGATFQNVTKLTRRIIKELKVDLRRIPEELGIRKVGVLLMQPAGCLQQS VGPSAMYSSKCNETYNVAIRRHNKLLREAVRDLNFKRRRTRNHSFVVLDMFKAFTVALEEHKYQTGRAEYKNPLKPCVSTEKGKYACTPQNAQLRDYRVC KHPELSFFDCDHPSQNGWKSIYLALHHSLHQLYHSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10042849 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	11.1	0.8809
					Lus10034718 [exp]	12.5	0.8640
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	15.0	0.8806
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	19.7	0.8762
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10040940 [exp]	21.9	0.7102
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	22.2	0.8645
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	23.1	0.8748
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	24.2	0.8710
					Lus10015828 [exp]	26.0	0.8701
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	27.1	0.8696

Compare expression of checked genes

Lus10042849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.