Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00440 290 / 7e-85 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 241 / 5e-68 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 192 / 2e-51 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 105 / 1e-23 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 69 / 1e-11 ATOBGM GTP-binding protein Obg/CgtA (.1) AT5G02390 63 / 7e-10 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G63670 63 / 9e-10 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028147 [exp] 918 / 0 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028148 [exp] 548 / 0 AT4G00440 89 / 3e-19 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 485 / 1e-158 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10014776 [exp] 484 / 2e-158 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 187 / 8e-49 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 173 / 1e-44 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10002008 [exp] 86 / 9e-17 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 76 / 9e-14 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 70 / 7e-12 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 717 / 0 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 671 / 0 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 129 / 3e-30 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.001G239500 [exp] 88 / 2e-17 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 84 / 4e-16 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 77 / 3e-14 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042850 pacid=23181838 polypeptide=Lus10042850 locus=Lus10042850.g ID=Lus10042850.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAATCTCAAAGACGTTTGGATAGAAATGCTAAGCCAGGCTGTATGTGGGGCCTCATTAACTTGCTGGATTTCCGCCATGGTCGAACAACTC AGAAGTTGCTTCCAGACAGGAGGCGTGAGACCAAGCGTGCCTTTGGTAGTGGACATAAAAATATTAAGCTTGACGATCAGAAGGCCTCGGATGGCGACGA AAATTTGGCTATGGCATCTGAGTTTGGCAAGCCAAGTGTCAAGAAACTCATAGAAGCAGATTTGTTAAAGGAGCACAACACAAAGAGTGAGATAAATGAC AGTGAAGTGAAACCAAATTCGGAAGAGGACATCCAGAAAAAGAAAAACAGCAAGAGAACAAAGAGGAGTCGCTCAAAAAGCTGTGAAATTCACGTTGAAG ACCTGAATGCCGTAGATAATAGGGAAGCTGGACAGCCTTATCCTCAGTATTTAGAGAAGCAATCTAGCATTAACATTGACGTAGGTGAACTAATAGAGGA GTTCTGCCACCAGCTCCAACAGAAATGTAGTAGTAGTTGTATAATGCACGGGGAGAGTTGTGAATTGCATCAGTCGAAACAGAATAATCTCGACTTTGAA GAGAGATGGACTAATGCAATCAAGTTATTTGTTAGTCAGAAGGTGAATGAAAGGAGGAAGCTTTTAAGCAACGAAAGGAATGTGTGCAGCTCCAAAGAAC TTAAGGATGCACTTCACAATTTATTTTCAGATGAGGAGTTCTCTTCAAAACTCTCGCAAGGCCAAAAGTGTATAATAATGAAGCAATTGGAGAAAGCTTG GAATTCGCAAGTAGAAATGGATGAAGACTCGACATTGGCTGTGAGAAGAAATACGGAAGAGCAGGACCTCTGCGAGTTGAATAAATCCCATGAACCTGCT GGCACCAAGCATAGGAGATTCTTCAGAAGGGCTAAATCCCGTGCCAACAACCCTTCAAGGGAAGCTGACTCCTTGAAAGCTTCAAACAGGATTGTCATTC TGAAGCCTACACCTACAGCCGAAACGAAAAGCAGTCTCGAATCATGTAGAAAGTCTCAACTGACTACCAAAGACAAAGGGTCAAATGAAAGAGGCAATTT CCATTTTTCCCTTACAGAAATTAAAAGACGCCTTAAGAATGCTATGGGGAAAGAGACACCACAAGTCTCTACTGGTCATACATCAAAGAGGTATGCCAAT GAGGTCCGGGTGTCGGGAAATGGTGACAGAAGATTCAAAGAGAACACTGGAAAGAGTTCATCGGGCAAAGAACACTTCTTCCTTGAAAAGATTGCTAGGC CTCCCGCGAGTGCCAGAAAGGCGGCTCATGTGACTGTCAAGCACAAAGGATCCGAACAAAGTATAGAAGTTGAACCCTCTGATCGTATCAACCCGAGGTT ATCCAATATCTACATAGAGGCTAAGAAACATCTTTCTGAGATGCTGATCACTGGGACTGAAGATGTGGACTTGCCAAGTGGTCAAGTCCCTAAACCGCTA GGGAGGATTCTATCCTTTCCAGAGTACAACTTTTCTCCTGTTAGCAGTCCTTCAAGGGAGGTGAGACCTAGTTTTGTAACAGCACAGATGAGATTGCCCA GCATGGACTCAGTTACAAGACGGGCTAGCAATATCAGCCATATGGGTAGGACATCACCGAGTTCGGAAGTTCCATCATTTACTGATATTAAAGCACAAGT TCTTTCTGATCCAACTTCATGTTCCTCAAGTGAATTGGTTCATGACGGCGATGGGGAGAAATCTGTTGGTTCAACAAGAGATGAAAGGATGACTCGAGGC TGGGATGTGGAGATTGAAAATTCCTTGGAGAATATAGCCCCAGAAGAGAGAATCATCGACGGTAATCTTGCTCAAACAAGTAGCTGTTGTGTCATCATAA ATGACCAAAATGCCGATTCCTCTGATACTGGAGATGAAAAAGAGAAGAATGAGTTATTGAAGCATGAAAGTTCTGTGTTCGAATCTCCATCCGCCTCATT AAATGGCAAGCATAGTTTAGAAGCCACCGAGATTGTCCACCGACCAAGTCCAGTGTCTGTCCTGGAGCCACTTTTTCTAGAGGAGGATATAAGTCCAGCG GCCAGCAGAACCCAACATGTTGAACTACTGGTGCAACCATTGAGAATTGATTTCGAGGAGCAAGATTCTTCATCTAGAGATTGGAGTACCACCTCTCCTT CAGAAGCTAGGGATGGAGAACCTATGCTTGAGTACATTAAAGCTGTACTTCTGTCCTCAGGTTTGAACTGGGAAGAGTTCTACTTAATGTCAGATTCTTC AGAGCAGATACTCGACCCGTCCAGCTGCGACGAGTTTGAGTTTTTGCCTAACCAGCTTTGCTGTGACAAGCAGCTCCTCTTCAATTGTATCGATGAAGTT TTGATGGAAGTATATGATTCCTATTTCGGCTGTTCACCTGGGCTATCTGTAGGAAAGCCGGTTATCCGTCCTATCCCAGACATGAAGCATACCGTTGATG AGGTATGGAGAAGACTACATTGGCATCTTCTTCCATTTCCGTCCCCTCGTACTCTAGATCAAGTTGTGAGGAAAGACATGATGAAGATTGGTGTTTGGAT GGACATTCGACGCGATACGGAAACTGTCCTTGTAGACATCAGCAACGTTGTTTTCGAGGAATTGATTGAAGAGACTGTGTTTTGCCTCTCTGAAAGTCGG TAG
AA sequence Show only first row Show all	>Lus10042850 pacid=23181838 polypeptide=Lus10042850 locus=Lus10042850.g ID=Lus10042850.BGIv1.0 annot-version=v1.0 MAKKSQRRLDRNAKPGCMWGLINLLDFRHGRTTQKLLPDRRRETKRAFGSGHKNIKLDDQKASDGDENLAMASEFGKPSVKKLIEADLLKEHNTKSEIND SEVKPNSEEDIQKKKNSKRTKRSRSKSCEIHVEDLNAVDNREAGQPYPQYLEKQSSINIDVGELIEEFCHQLQQKCSSSCIMHGESCELHQSKQNNLDFE ERWTNAIKLFVSQKVNERRKLLSNERNVCSSKELKDALHNLFSDEEFSSKLSQGQKCIIMKQLEKAWNSQVEMDEDSTLAVRRNTEEQDLCELNKSHEPA GTKHRRFFRRAKSRANNPSREADSLKASNRIVILKPTPTAETKSSLESCRKSQLTTKDKGSNERGNFHFSLTEIKRRLKNAMGKETPQVSTGHTSKRYAN EVRVSGNGDRRFKENTGKSSSGKEHFFLEKIARPPASARKAAHVTVKHKGSEQSIEVEPSDRINPRLSNIYIEAKKHLSEMLITGTEDVDLPSGQVPKPL GRILSFPEYNFSPVSSPSREVRPSFVTAQMRLPSMDSVTRRASNISHMGRTSPSSEVPSFTDIKAQVLSDPTSCSSSELVHDGDGEKSVGSTRDERMTRG WDVEIENSLENIAPEERIIDGNLAQTSSCCVIINDQNADSSDTGDEKEKNELLKHESSVFESPSASLNGKHSLEATEIVHRPSPVSVLEPLFLEEDISPA ASRTQHVELLVQPLRIDFEEQDSSSRDWSTTSPSEARDGEPMLEYIKAVLLSSGLNWEEFYLMSDSSEQILDPSSCDEFEFLPNQLCCDKQLLFNCIDEV LMEVYDSYFGCSPGLSVGKPVIRPIPDMKHTVDEVWRRLHWHLLPFPSPRTLDQVVRKDMMKIGVWMDIRRDTETVLVDISNVVFEELIEETVFCLSESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	0	1
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	2.0	0.9103
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	2.8	0.9059
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	3.9	0.9009
AT4G18490			unknown protein		Lus10021779 [exp]	4.5	0.8815
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	6.6	0.8855
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	7.1	0.8529
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	7.7	0.8425
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	10.6	0.8739
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036628 [exp]	13.2	0.8263
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	14.3	0.8479

Compare expression of checked genes

Lus10042850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.