Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 426 / 4e-148 Protein kinase superfamily protein (.1) AT3G09010 352 / 4e-119 Protein kinase superfamily protein (.1) AT3G14840 333 / 5e-105 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 333 / 6e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 333 / 7e-105 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 333 / 9e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 329 / 3e-103 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 326 / 2e-102 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 325 / 3e-102 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 323 / 2e-101 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028149 [exp] 684 / 0 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042460 [exp] 427 / 1e-148 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 422 / 1e-146 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10004825 [exp] 358 / 1e-121 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 342 / 1e-114 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10026503 [exp] 330 / 1e-110 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 329 / 2e-110 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10023510 [exp] 330 / 8e-110 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10011193 [exp] 324 / 2e-108 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393200 [exp] 455 / 2e-158 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 430 / 8e-150 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 426 / 5e-148 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 422 / 1e-146 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 364 / 4e-124 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 350 / 1e-118 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 350 / 2e-118 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 349 / 3e-118 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 340 / 8e-115 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.011G073066 [exp] 337 / 4e-113 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042851 pacid=23181924 polypeptide=Lus10042851 locus=Lus10042851.g ID=Lus10042851.BGIv1.0 annot-version=v1.0 ATGATGATGCCTGTTAAATCAGCTGTCGGATTTAGTTGCCATACATGGTTATCCGACTGTGAATTGATTGCAGTTGTTCGAGTAGCTGCTGGGGAGCAGC TTAATGTTCCAGGAAAGCATAAAAACCAAATATACTGTGGAGCTAGCTCTATTGCTTTCTACACTAACTGTATATCAAACATACACAACGTACGCTTGTA TAACTACAGAGAACTGGAGGTGGCAACCGGGAATTTTAACCGATCGAGTAAAATTGGAGAGGGGGGTTTCGGTTCTGTCTACAAGGGGACACTTAAAGAT GGTACTGTTACTGCCATTAAGGTCTTGTCTGCTGACTCGAGGCAAGGCACAAGGGAATTCTTGACAGAAATAGAAGTGATTGCTAATCTAGAACATGAAA ACTTGGTCAAGTTGTATGGTTGCTGTGTGGAAGCAAACCACAGAATTTTGGTATATGGTTATCTTGATAATAACAGTCTTGCTCAGGCACTACTTGATGG AAGATCTGCAAGGAGCATCGATCTCAACTGGCTTGCAAGGCGCAAAATATGCTTTGGAGTGGCTGAAGGGCTTCGATTCCTTCACGAGGAAGTCCAACCA CGTATAGTGCATAGGGATATCAAAGCAAGCAACATACTTCTCGACAGAGAGCTCTCACCGAAAATATCAGACTTCGGCCTTGCGAAGCTTTTCCCGTCAC ACCTGACACATATTAGTACCCGTGTTGCGGGAACTCTAGGATATCTCGCACCCGAATATGCAATTTGGGGTCAGTTGACTAGAAAAGCAGACGTATATAG TTTTGGTGTACTTGTTTTGGAAATTGTTAGTGGGAGGCCCAACAAGGAAAGAGCATCGCTTCCGGAGGAGGATCATCTTCTTGCAATGGCATGGAAACTC CATGGTAAGGGGAAACTTGAGAGCTTGGTCGACGCTAGTCTAGCTGGGGATTACGATTCTGAAGAGGCATGCAGATTCCTTAAGATTGGGCTACTCTGCA CTCAGGAGAAGACCAAGCTTCGGCCATCGATGTCTAGTGTCGTCGAGATGCTAAGAGGTGAATGTTCAATAGACAAGGAGAAAATAACGGAGCCTGGTTT TGTTGCAACAAAAGGGAAAGTGGCAAGGAAATCACATGATGTTGATGCTGGATCTTCAGGCTCATCAAGCAAGCTGGGAAAGCAATCTTCGTCATCATAT ACAATGGCAACGTCACATGGTACTATGACCTTCACTTCCATAAACGATCGATGCAACTAG
AA sequence Show only first row Show all	>Lus10042851 pacid=23181924 polypeptide=Lus10042851 locus=Lus10042851.g ID=Lus10042851.BGIv1.0 annot-version=v1.0 MMMPVKSAVGFSCHTWLSDCELIAVVRVAAGEQLNVPGKHKNQIYCGASSIAFYTNCISNIHNVRLYNYRELEVATGNFNRSSKIGEGGFGSVYKGTLKD GTVTAIKVLSADSRQGTREFLTEIEVIANLEHENLVKLYGCCVEANHRILVYGYLDNNSLAQALLDGRSARSIDLNWLARRKICFGVAEGLRFLHEEVQP RIVHRDIKASNILLDRELSPKISDFGLAKLFPSHLTHISTRVAGTLGYLAPEYAIWGQLTRKADVYSFGVLVLEIVSGRPNKERASLPEEDHLLAMAWKL HGKGKLESLVDASLAGDYDSEEACRFLKIGLLCTQEKTKLRPSMSSVVEMLRGECSIDKEKITEPGFVATKGKVARKSHDVDAGSSGSSSKLGKQSSSSY TMATSHGTMTFTSINDRCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	1.0	0.9681
AT1G30140			unknown protein		Lus10024751 [exp]	2.0	0.9564
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	2.2	0.9461
AT5G48340			unknown protein		Lus10041085 [exp]	2.4	0.9472
					Lus10022017 [exp]	3.5	0.9465
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	4.2	0.9451
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	4.4	0.9248
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	4.6	0.9420
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	4.9	0.9415
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	5.8	0.9154

Compare expression of checked genes

Lus10042851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.