Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53025 318 / 9e-103 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 301 / 1e-95 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 271 / 2e-87 Ubiquitin-conjugating enzyme family protein (.1) AT2G16920 254 / 2e-74 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 236 / 8e-69 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT3G13550 61 / 1e-10 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT2G02760 59 / 2e-10 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 59 / 2e-10 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT4G27960 59 / 3e-10 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 58 / 4e-10 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028151 [exp] 466 / 1e-160 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10018596 [exp] 285 / 6e-91 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10039831 [exp] 280 / 4e-89 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10005854 [exp] 257 / 1e-76 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 248 / 2e-75 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10034472 [exp] 248 / 2e-73 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10025070 [exp] 249 / 4e-73 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10037778 [exp] 231 / 9e-72 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 219 / 7e-68 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118800 [exp] 373 / 9e-123 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 370 / 2e-121 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 289 / 7e-92 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G052600 [exp] 260 / 2e-77 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 249 / 1e-73 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.010G146500 [exp] 231 / 1e-71 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 230 / 6e-71 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G176000 [exp] 242 / 5e-70 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.009G136000 [exp] 241 / 8e-70 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 146 / 6e-40 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10042852 pacid=23181791 polypeptide=Lus10042852 locus=Lus10042852.g ID=Lus10042852.BGIv1.0 annot-version=v1.0 ATGGAAGACGCCGACGTCGTTGAAATCTCCCCGCTCTCCTTCCCGCCTTCTCGCTCCACCAAGAAGAGAAAACAGAAGCAGGTTGCGTTCCCTGAAATAA TTGACGTTGATGCACATGATTTTGTCAGCGATATCATAATCTTGGACAAGAAAGAGAGCAGGAAAGACAAAGGAAAAGCTATTCTGAATGATTTTAACAG TCATGCCAAAGATCAGTTTTATCCTTGTTTCCATGCGTTTCACCAGAAAACTGTGGTCGATCATCATCTTCTCTCTCAGCCTTGGAATCTTTCAACTCAT TCTCATGATGTAATCAACCTAGATACGAGCTTCAATCCCGTCCCTTATGGAGCCACAACTTTTAATGGGCTTGCATCTCTACAACCTATTCTCAACAATG CAACGTTCGCCACTGGAGTTCAGACTCCCATGTCATCTCTTCTTGGTCCATTTGCCAACACTCAACCAAATCTTAACGGAAGTGCAGTCTCTTATACCTT ATACGAACAAGAGCAGAATCTCAGAAATGGAAATAACTTCTGGAAATCTACTACAGTCAATCTTCCAGCTACTAGTGCAGGTTTTGGGATTCCAGTGGGC TCTGCATATGATTCTTCTGCAACGAATGTATTGCTCCTTGGTGGGGCTCATCTAAATACCCGAAGTCGGAAGAAAGGAACTCTTTCCCAGCATGGAGGGA TTCCTCTGAATAATTCACATTTTCAAGTGTCTGCTAGTCTATTGCATGGTGACACCTCGATGAAAAGCGAAATGGGTGATAGCATATTTGTGAGGGTCTA TGAGTCCAGGTTGGACCTAATGAGAGCCGTAATTGTCGGGGCAGATGGCACTCCATACCATGATGGTCTATTTTTCTTCGATATCTTCTTCCCCAGTGGC TACCCGAATGTTCCACCAAAAGTTAACTACCATGCTGGTGGTCTTCGAATCAATCCAAACTTGTATGCTTGTGGAAAGGTTTGCCTCAGCCTTCTCGGAA CATGGGCTGGTCAAAAGAATGAGAACTGGCAGCCTGCAGTTTCAAATGTCATGCAGGTTCTGCTTTCTATACAAGCATTGATATTGAATCAAAAACCCTA CTTTAATGAGCCTGGCTATGCACGCTCAAAGGGCCAGGCTCATGGTGAAATCCAGTCACAACTGTACAGCGAGAATACATTCCTTCTGTCACTGAAAACA ATGGTTTACACAATGAGGCAGTCACCAAAACATTTTGAGGATTTGGTGAAGGGCCATTTCTACAAGCGTGCTAATGACATCATGGTGGCTTGCAAAGCAT ACAAGGGTGGTGCACAGGTGGGGTGTCTGGCTAAAGGCGGAATCCAGGATCTGGAGGAAGGAGACAAGAGCTGCTCGACGAATTTCCAGAAGTCTTTATC AGAGTACATGGACATGCTTGTGCCAGAGTTCAGCAAGATTGGATGTCAGAACCTGTGA
AA sequence Show only first row Show all	>Lus10042852 pacid=23181791 polypeptide=Lus10042852 locus=Lus10042852.g ID=Lus10042852.BGIv1.0 annot-version=v1.0 MEDADVVEISPLSFPPSRSTKKRKQKQVAFPEIIDVDAHDFVSDIIILDKKESRKDKGKAILNDFNSHAKDQFYPCFHAFHQKTVVDHHLLSQPWNLSTH SHDVINLDTSFNPVPYGATTFNGLASLQPILNNATFATGVQTPMSSLLGPFANTQPNLNGSAVSYTLYEQEQNLRNGNNFWKSTTVNLPATSAGFGIPVG SAYDSSATNVLLLGGAHLNTRSRKKGTLSQHGGIPLNNSHFQVSASLLHGDTSMKSEMGDSIFVRVYESRLDLMRAVIVGADGTPYHDGLFFFDIFFPSG YPNVPPKVNYHAGGLRINPNLYACGKVCLSLLGTWAGQKNENWQPAVSNVMQVLLSIQALILNQKPYFNEPGYARSKGQAHGEIQSQLYSENTFLLSLKT MVYTMRQSPKHFEDLVKGHFYKRANDIMVACKAYKGGAQVGCLAKGGIQDLEEGDKSCSTNFQKSLSEYMDMLVPEFSKIGCQNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10042852 [exp]	0	1
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	3.5	0.8943
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	4.2	0.8995
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	6.9	0.8981
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	12.2	0.8745
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10034964 [exp]	13.5	0.7988
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	15.2	0.8787
AT3G09010			Protein kinase superfamily pro...		Lus10018481 [exp]	17.7	0.8179
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	19.4	0.8835
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	21.4	0.8755
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	23.1	0.8664

Compare expression of checked genes

Lus10042852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.