Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16900 353 / 9e-117 Alg9-like mannosyltransferase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028153 [exp] 466 / 4e-161 AT1G16900 726 / 0.0 Alg9-like mannosyltransferase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110800 [exp] 392 / 6e-132 AT1G16900 764 / 0.0 Alg9-like mannosyltransferase family (.1) Potri.001G392050 [exp] 82 / 7e-19 AT1G16900 81 / 3e-19 Alg9-like mannosyltransferase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF03901 [flax] [poplar] Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10042853 pacid=23181678 polypeptide=Lus10042853 locus=Lus10042853.g ID=Lus10042853.BGIv1.0 annot-version=v1.0 ATGTCCCTAACGGCTCGGCAGAGGCGTCCGGATCCATCGTCGACGGAGGCAACGCCGGAACCTTACACGAAGGTCGATAAGCCGCCTCGATCTTCCCTCA ATGAGGAGCAACAACAGCTCGGATGGTTTATGCCCGTGATTGCTTTAGGATTGCTCCGTTACATGAGTGCCACTTCCAACATCATCCATGACTGCGACGA GGTTTTCAATTACTGGGAGCCTCTTCATTTCCTTCTCTACAAATCCGGTTTTCAGACTTGGGAATACAGGCACGCAAACCCAAACTCTTTTTCAATCAAT TTTCACTCCAAACCCTATTTTGCTCTTCGATCTTACTTGTACATTAATCTCCATGAACTAGTCGGTCTGCCAGCTTCATGGCTGTTTACAGATGATAAAG TGAGAGTATTCTATGCAGTAAGACTGCTCATTGGACTCATCTCTGTTATAGCAGATGCAACCCTTGTAGTGGCCCTCTCCAGGAAGTATGGCAAGCGTCT TGCTTCATATGCACTTGCGATGCTCTGCTTAACCAGTGGTTGTTTCTTCTCTAGCACAAGTTTTCTGCCAAGTTCTTTCTCTATGTATGCCATGAGTCTC TCTTCAGGGTTGTTTCTTCTTGAGAAGCCTGCTCTGGCTGTGGCTGTGGCAGCTATTGGGTGTCGTCTCTTTCGCTTATTATTCCTCTACCCAGTCTATC CTCTAGTTTGTGTAGCTGCTTCTGCGGTTATTGAGAGCTTTCCGGATCTTGTCAGAGAGAAGCACAATCCAAATGACAATTCAGTTATAGTAATAATAGC CAAAGTTCTTAGACCATTGGTGCTCAGCATGATATTATGTGCTTCACATGCTCGGACATTTTCACTGATTAACGGATATGCTGCTCCAATGGAGGTTTAC AAGGTGTTAGATCACTATGATGAAGCGGGAACAGGTTCTGTTCTTTGTGTTGGAAGTGAATGGCACCGCTTTCCTTCGTCATTTTTTGTGCCTGACTATG TGGGTGAAGTCCGGTGGATCGATGACGGGTTTAGAGGTCTACTTCCTTTGCCATTCAATTCATCGTTGGGAGGCACATCGGCAGCTCCTCCGTATTTTAA CAGCAAGAATAAGGCGTCAGATTTGCAATACCTCCAAGATATCGAAACTTGTGATTTCTTGGTAGAGCTGCAGCTTAATCGTCCTTATCCTTCTCGTGGA AGTGACTTGTCAAAATGGGAGCCTATTGCGGCATTGCCATACTTGGACAGGGAGTTGTCGCCTCCATTTTATCGTTCGTTCTTCATCCCATTTCTGTGGC AGGAGAAGAATGTGTTTGGAATGTATAAATTGCTTAAAAGAGTACCAAAACAACATGCATAG
AA sequence Show only first row Show all	>Lus10042853 pacid=23181678 polypeptide=Lus10042853 locus=Lus10042853.g ID=Lus10042853.BGIv1.0 annot-version=v1.0 MSLTARQRRPDPSSTEATPEPYTKVDKPPRSSLNEEQQQLGWFMPVIALGLLRYMSATSNIIHDCDEVFNYWEPLHFLLYKSGFQTWEYRHANPNSFSIN FHSKPYFALRSYLYINLHELVGLPASWLFTDDKVRVFYAVRLLIGLISVIADATLVVALSRKYGKRLASYALAMLCLTSGCFFSSTSFLPSSFSMYAMSL SSGLFLLEKPALAVAVAAIGCRLFRLLFLYPVYPLVCVAASAVIESFPDLVREKHNPNDNSVIVIIAKVLRPLVLSMILCASHARTFSLINGYAAPMEVY KVLDHYDEAGTGSVLCVGSEWHRFPSSFFVPDYVGEVRWIDDGFRGLLPLPFNSSLGGTSAAPPYFNSKNKASDLQYLQDIETCDFLVELQLNRPYPSRG SDLSKWEPIAALPYLDRELSPPFYRSFFIPFLWQEKNVFGMYKLLKRVPKQHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16900			Alg9-like mannosyltransferase ...		Lus10042853 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	23.9	0.8624
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	32.6	0.8139
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	37.1	0.8117
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	39.6	0.8335
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	45.6	0.8213
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	47.2	0.8346
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10020098 [exp]	67.6	0.8169
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	83.8	0.8006
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026727 [exp]	98.1	0.7650
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	99.2	0.8091

Compare expression of checked genes

Lus10042853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.