Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60240 662 / 0 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT5G57870 206 / 1e-54 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 197 / 8e-52 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G62410 111 / 4e-27 MIF4G domain-containing protein (.1) AT4G30680 51 / 3e-06 Initiation factor eIF-4 gamma, MA3 (.1) AT4G24800 50 / 2e-05 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 47 / 0.0002 MA3 domain-containing protein (.1.2) AT1G22730 45 / 0.0004 MA3 domain-containing protein (.1) AT3G48390 44 / 0.001 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028156 [exp] 1118 / 0 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036594 [exp] 218 / 4e-59 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035813 [exp] 207 / 7e-57 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 209 / 2e-55 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 191 / 1e-49 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036256 [exp] 89 / 4e-18 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10012205 [exp] 67 / 7e-11 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10011324 [exp] 64 / 1e-09 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10035812 [exp] 59 / 2e-09 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052600 [exp] 785 / 0 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 776 / 0 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.018G017600 [exp] 199 / 1e-52 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G104100 [exp] 199 / 2e-52 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 197 / 9e-52 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 195 / 4e-51 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.015G088300 [exp] 52 / 3e-06 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.005G199200 [exp] 46 / 0.0003 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10042856 pacid=23181662 polypeptide=Lus10042856 locus=Lus10042856.g ID=Lus10042856.BGIv1.0 annot-version=v1.0 ATGTCCTTCAATCAATCTAGGTCCGATAGGAGCGACGCTCAGTTTCGGAAACAAGGCCGATCCGGCAGCTTTAATCAGCAGCGGAACTCCTCAGGCCCTC CTCACGGTAGAGGCGGCGGCCCCGCCCCTTCACCGCCTTCTTCTTCTCTCCCTTCCAACCGCAGTTATAAAAAATCTGGCAATGTTCAAGGTGGGCAATT TCGGTCAAACGCACCTGCAGCTAATTCTCTTGATTATGCCAATGCTGTAGCATCCCATAATGCGCAGAATGGTGGCCGCGTACAGCCTCCATCACAAGGT CATTCTGATGCATCAGCTGCAAGTATGGTTACTAAGCCAACTGAGGCGGCAGCTCCACAGAGAAGTACCCGCCCAGTCCCAAAGGCTCCAACTTCTCACT CTTCCACCATGACTGGAGATAATTCAACACCTGCTACGCCTGCCAAGGGTGATGCATCCAAGTCATTCCCGTTCCAATTTGGGTCCATTAGTCCTGGTTT TATGAATGGGATGCAGATCCCAGCTCGAACAAGCTCAGCTCCTCCAAACTTGGATGAGCAGAAACGTGACCAGGCACGCCATGAGTCACAAAGATCTGCT CCTGCAACTCAGATTCCAAAGCAGTTACCGAAGAAGGATAGCGGCCCTGTGAACCAATCCAATACAAGGGAGTCTCAATCGGTTCCCAAGTCCAAGATAG ACGCACAAGTCTTCCCTTCATCGCCACTCAACCAAACACATAAGCCTTCTGTACTTCCGATGCCTATGAACACGATGCCAATGCCGTTTCCCCAGCCACA AGTATCAGTGCAGTTTGGTGGCCCAAACCCTCAATTACAGTCTCAGGGTATCACTGGAAATTCTCTTCAGGTTCCAATCCCCATACCATTAACAATGGGG AATGCTCCTCAGGTCCAACAGTCAATGTTTGTTCAAGGTCTTCAACACCATCCAATGCAGACTCAAAACCTCATGCATCAAGGACAGGGCTTGGGTTTTA CAAGTCAAATGGGGCATCCATTGCCTCAGTTGGGAAACTTAACTATGGGTATATCTTCACAGTTTCAACAGCAACAAGGAGGCAAGTACGGCAGTGCACG GAAAACGACTGTAAAAATTACAGATCCCAAGACTCATGAGGAGTTGAGACTGGATAAGCGGGCGGATGCATATGCAGATGGTGGAACGTCAGGCTTGAGA GGTCATCCTAACATGCCTCCTCAATCCCACCCAATGCCATCTTATCCACCTACTCATACAATTAACTATTTCCCTAATTCTTATAATGCGAACAATCTGT ATTATCACCCTCCAGGCACTCTGCCATTAACCAGTGGGCAGGTGCCCCCTGGATCTCAGGCACCTAGATTCAGCTATCCTGTGAATCAGGGCCCACAAAA TGTGTCATTTGTCAACCCTTCTGCCACATCTTCCCAATCGGGCAGCAAATCTGGACCTACAGTACATGGACATCCAGTCTCACTGAATTCTGAACATGCA CCTGATGCTTCTATTTCTGTGAAACCCAAACTTTTTTCAAGCTCAACCACAGCTAAAGCCGCGGATGCACTATCAGTAACAAGCTTGTCTGCTATTGATA AAGCTGGATTGCAGAAAGCACCCATGCCCTCTGAAGTTGTCTCTTCTCATCAAGGATCGGTTGGACCTGATACTTTGGGATCTAAAGCATTGCCTGTTTC AGCTAAAGATCTTCCTTTATCTTCTGTTTCTTTTGTGGCTCCCAGTCCTCTCTCTACTGCATCTGATGTAATCAAGGAACCAGCGCCAGCTCTTACTAGT GCTGAAGCCAGGAGGAAGGAGAACCTTAGTTCCAACTCTATTAAGGACAATCAGAAGAAGCTGGTTAAAAAAGGCTCCACCCAGCACCAGCATGAGGTTG AGGAGTCGACTTCTTCAGTTTCAAGTGCAGCAGTTTTGGTAGCCACTGATGGCTTAACTGTTCTAAACAAAGAAGCCACGATTAGCTGCGTTGGAGGTGG TCCCAGTGCAGTCTTACTTGAAGCTTCTGGTACTGGAGATGTAGTAAACATTCCTAATGTCGCCAAGGTACAAGATTCTTCTTCGCTGTTGAAGTTTGAG ACTCCAGCAGCAACAGAAGGAAAAGAAAAGGAATCAAAAAATGTTGCTAACTCAGAGGAAAATAGCTCTGTGCTACCGTCAGCACCCGCTTTAAAGTATA CCGACTGTGTGAATAAGACCCAAGAGGAATCTGTTTTGGCTACAGATTCTGGCAAAGAGGTTCCTTCTGTAGGAAATGTGCAGAAACAGCAGGATGAACC AGTGACTTGCCAAGCAGAGAAAAGCAGGACAGCAGAGGAAATAGATGTTACCTCATCCAGTAGTGGTGGTCCATCAGATTCTATGAAGTTGGATAGTGAC GAAACCAAAACTAATATAGTGGGTGACAAAGGAATTTCTGTCGCAGCTTCAAGTTTAGCAGATCAGCTGGCTACAGTTTGTACCCTTGATTCTGATTCTG GGTTGAAGCAAGAAGGCTTGCCTGATAGCTGCGGCTTGAAGGAGGCAACCTCTGTTGATGTTGGCTCTGGACCGAGTGATGAAGGTGCATCAAATAAGCA TGAACCTGAAGATTGGGAAGATGCTGCTGACATCTCTACACCAAAGTTGGATAATATTGACGGTGGGAGGCAGGTACATGACAGTTTGTTGCAGGAGGAT GAGGATATTCTTCTGGACAAAAAATACTCGAGAGACTTTCTTCTGAAATTCTCTGAACAATGTACTGACCTTCCTGAGGGGTTTGAGATTACAGCAGATA TAGCGGATGTTTTGATCAGTTCGAATGGTGCACCTCTTGTTGAACGCGAATCATATCCTAGCGGTGGGAGGAGTGTGGATAGGTCAAACAGTGGATCGAG GATGGATCGGAGAGGAGGTAACATGACGGAAGATGGCCGATGGAGCAAGCAACCAGGTCATTTTGGTTCAGGAAGAGATCTACAAGTGGACATTGGGTAT GCTGCAAATATTGGTTTCCGACCTGGTCAAGCTGGAAATTCCGGTGTGTTGAGGAATCCTCGATCGCAGGGTCCCATGCAGTATGCTGGAGGAATATTAT CTGGGCCAATGCAATCAGTGGGCGCTCAAGGTATGAATAGGAACAGCACTGATGCTGACAGGTGGCAGCGTGGAACCAATTTCCAGAAGGGATTGATTCC TTCCCCACAAACTCCATTGCAGGTGATGCACAAGGCTGAGAGGAAGTATGAAGTTGGTAAAGTGACCGACGAAGAACAAGCCAAACAGCGGCAATTGAAG GCCATTTTGAACAAGCTGACACCTCAGAATTTTGAGAAGCTTTTTGAGCAAGTCAAAGCTGTTAACATTGACAATGCTGTTACACTAACAGGTGTGATTT CACAGATTTTTGACAAAGCTTTGATGGAGCCAACCTTCTGTGAAATGTATGCCAACTTTTGCTATCATCTAGCTGGAGATTTGCCTGATTTCACTGAGGA TAATGAAAAAATAACATTCAAGAGGTTGCTTCTGAACAAGTGTCAAGAAGAGTTTGAGAGAGGAGAAAGAGAGCAAGAGGAAGCTGATAAAGCTGATGAG GAGGGTGAAACAAAACTGTCTCCGGAGGCGAGAGAGGAAAAAAGGGTGAATGCTCGAAGAAGAATGCTTGGTAACATACGTCTGATAGGAGAGCTATACA AGAAGAAGATGTTGACAGAGCGAATCATGCACGAGTGCATCAAAAAGTTGTTGGGCCAGTATCAAAACCCGGATGAGGAAGATGTTGAAGCATTATGTAA ACTGATGAGCACAATCGGTGTAATGATTGATCATCCTAAAGCAAAAGAGCATATGGATGCTTATTTTGATAGGATGACCAAATTATCAAATAACCCGAAA CTATCTTCTCGGGTCAGATTCATGTTGAAGGATGCTATTGATCTTAGGAGGAACAAATGGCAGCAAAGAAGGAAGGTTGAAGGGCCAAAAAAGATTGATG AAGTCCACAGAGATGCTGCCCAAGAACGCCATCATCAGGGCGGAAGGGGATCTCGTAATCCTACAACTCCTGCAAGAAGAGGAACGATGGATTTTGGCCA TAGAGGGTCATCTATGCTACCTTCTCCGAACTCGCATATGGGCGGTTTTCATGGTTTCCACAATGTGAGAAGAGGGGGACCTGGATTGAATGGTTTTGGC TCAAGGGAAGATGTTGCGCCAAGATATGTTTCCGATAGAATCAACAACGCTCCTACTTCTTTTGATCAATCAGCTCTCCAAGATCGCAATGTGAATCTTG TTAGGGATGGCCATGCTGCATCAATACCTTCTCAGTCACAGCCACCTGCTGCCAGCCAAAGTGTACCTTCTGGAAATGCTTTGCCCGAGGAACGTCTAAG GGATATGTCAATCGGAGCAATTAAAGAATATTACAGTGCCCGAGACGAGAAAGAAGTAGCCCTATGCATCAAAGACATGAATTCTCCAGGGTTTCATCCT TCAATGATCTCACTCTGGGTCACAGATTCATTTGAGAGGAAGGACATGGAGAGGGATCTATTAGCTAAGCTTATTGTAAGCCTTGCAAGGCCGCATGATG CAACACTGACTGACGGCCAGCTAGTTCAAGGGTTTCAAGAAGTGCTGAGTACGTTAGAGGATACAGTGAATGATGCGCCAAGAGCTGCAGAATTCCTAGG TCGCATATTCGGGCGAGTCGTACTGGAGAATGTGGTACAGCTGAAGAAGTTTGGGGAGTTGTTACAGGCAGCAGGGGCAGAGGAGCCAGGGCAGCTGCTG GAGGCAGGTCTTGCTGGAGATGTTCTTGGGAGCACTCTGGAAATCATCAAAGAAGAGAAAGGAGAAACCGGATTGAATGAGGTTCAATCCGGTTCGGGGT TACGGTTGGAGGATTTCATTCCTCCAAAGCCCTGCAGATCCAGGATACTAGAAAGATTTATTTAG
AA sequence Show only first row Show all	>Lus10042856 pacid=23181662 polypeptide=Lus10042856 locus=Lus10042856.g ID=Lus10042856.BGIv1.0 annot-version=v1.0 MSFNQSRSDRSDAQFRKQGRSGSFNQQRNSSGPPHGRGGGPAPSPPSSSLPSNRSYKKSGNVQGGQFRSNAPAANSLDYANAVASHNAQNGGRVQPPSQG HSDASAASMVTKPTEAAAPQRSTRPVPKAPTSHSSTMTGDNSTPATPAKGDASKSFPFQFGSISPGFMNGMQIPARTSSAPPNLDEQKRDQARHESQRSA PATQIPKQLPKKDSGPVNQSNTRESQSVPKSKIDAQVFPSSPLNQTHKPSVLPMPMNTMPMPFPQPQVSVQFGGPNPQLQSQGITGNSLQVPIPIPLTMG NAPQVQQSMFVQGLQHHPMQTQNLMHQGQGLGFTSQMGHPLPQLGNLTMGISSQFQQQQGGKYGSARKTTVKITDPKTHEELRLDKRADAYADGGTSGLR GHPNMPPQSHPMPSYPPTHTINYFPNSYNANNLYYHPPGTLPLTSGQVPPGSQAPRFSYPVNQGPQNVSFVNPSATSSQSGSKSGPTVHGHPVSLNSEHA PDASISVKPKLFSSSTTAKAADALSVTSLSAIDKAGLQKAPMPSEVVSSHQGSVGPDTLGSKALPVSAKDLPLSSVSFVAPSPLSTASDVIKEPAPALTS AEARRKENLSSNSIKDNQKKLVKKGSTQHQHEVEESTSSVSSAAVLVATDGLTVLNKEATISCVGGGPSAVLLEASGTGDVVNIPNVAKVQDSSSLLKFE TPAATEGKEKESKNVANSEENSSVLPSAPALKYTDCVNKTQEESVLATDSGKEVPSVGNVQKQQDEPVTCQAEKSRTAEEIDVTSSSSGGPSDSMKLDSD ETKTNIVGDKGISVAASSLADQLATVCTLDSDSGLKQEGLPDSCGLKEATSVDVGSGPSDEGASNKHEPEDWEDAADISTPKLDNIDGGRQVHDSLLQED EDILLDKKYSRDFLLKFSEQCTDLPEGFEITADIADVLISSNGAPLVERESYPSGGRSVDRSNSGSRMDRRGGNMTEDGRWSKQPGHFGSGRDLQVDIGY AANIGFRPGQAGNSGVLRNPRSQGPMQYAGGILSGPMQSVGAQGMNRNSTDADRWQRGTNFQKGLIPSPQTPLQVMHKAERKYEVGKVTDEEQAKQRQLK AILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFDKALMEPTFCEMYANFCYHLAGDLPDFTEDNEKITFKRLLLNKCQEEFERGEREQEEADKADE EGETKLSPEAREEKRVNARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQNPDEEDVEALCKLMSTIGVMIDHPKAKEHMDAYFDRMTKLSNNPK LSSRVRFMLKDAIDLRRNKWQQRRKVEGPKKIDEVHRDAAQERHHQGGRGSRNPTTPARRGTMDFGHRGSSMLPSPNSHMGGFHGFHNVRRGGPGLNGFG SREDVAPRYVSDRINNAPTSFDQSALQDRNVNLVRDGHAASIPSQSQPPAASQSVPSGNALPEERLRDMSIGAIKEYYSARDEKEVALCIKDMNSPGFHP SMISLWVTDSFERKDMERDLLAKLIVSLARPHDATLTDGQLVQGFQEVLSTLEDTVNDAPRAAEFLGRIFGRVVLENVVQLKKFGELLQAAGAEEPGQLL EAGLAGDVLGSTLEIIKEEKGETGLNEVQSGSGLRLEDFIPPKPCRSRILERFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	0	1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	1.0	0.9832
AT5G65950			unknown protein		Lus10037422 [exp]	2.4	0.9503
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	2.4	0.9333
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	3.2	0.9139
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	4.5	0.9203
AT1G79090			unknown protein		Lus10031788 [exp]	4.8	0.9002
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	5.2	0.9166
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	5.3	0.9099
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	5.8	0.9077
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	6.5	0.9007

Compare expression of checked genes

Lus10042856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.