Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 463 / 2e-164 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 312 / 4e-104 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 270 / 1e-88 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT1G79320 107 / 3e-26 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79340 103 / 1e-24 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79310 102 / 3e-24 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G79330 102 / 3e-24 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT5G04200 98 / 4e-23 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 82 / 2e-17 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028157 [exp] 506 / 3e-180 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 300 / 2e-99 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 293 / 9e-97 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010766 [exp] 261 / 3e-86 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 233 / 5e-74 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 212 / 9e-66 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 187 / 2e-52 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10001761 [exp] 110 / 8e-27 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 109 / 1e-26 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052500 [exp] 453 / 2e-160 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 414 / 5e-145 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 403 / 1e-140 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 402 / 6e-140 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 330 / 5e-111 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 231 / 4e-73 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 213 / 3e-66 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 189 / 1e-56 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.010G175000 [exp] 108 / 2e-26 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 107 / 5e-26 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10042857 pacid=23181754 polypeptide=Lus10042857 locus=Lus10042857.g ID=Lus10042857.BGIv1.0 annot-version=v1.0 ATGTCAACGTTGATGCTGGTGAATTGTTCCGGTTGCCGGACGCCTTTGCAGCTTCCTCCGGGCGCCCGATCCATCCGCTGCGCACTCTGCTACGCCGTCA CCAACATCGCCGACCCTCGCTCCACTCCTCCTCCGTCGTCTTCGCCTCATTCCTCCTTGATTCCTCCTTCGCCGCCGCCCTCCTCTCATCTTCCTCCTCC TTACCAACCGCCGCCGCCCTCCTCTCATCTTCCTCCTCCTTACCAACCGCCGCCGCCGAGCTCACATGGCCGCAAAAAGGCTGTGATCTGCGGTATTTCG TACAGGTTTTCCAGGCATGAGCTCAAGGGTTGCATAAACGACGCCAAGTGCATGCGTCACCTTCTCATCAACAAGTTCCACTTCCCGCCTGATTCCATTC TTATGCTTACTGAGGAGGAAACTGATCCCTACAGAATACCAACTAAACATAATATGAGGATGGCATTATATTGGCTTGTGCAAGGTTGTCAGTCTGGAGA CTCTTTGCTTTTCCATTATTCGGGCCATGGTTCCAGGCAGAGAAATTATAACGGTGATGAAGTTGATGGATATGATGAAACTCTATGTCCTTTGGATTTC GAGACTCAAGGCATGATTGTCGATGATGAAATCAATGCAACCATTGTCAGACCTCTACCTCACGGTGTCAAGCTCCATGCTATAATTGATGCTTGCCATA GTGGCACTGTTCTGGATTTACCCTACCTTTGCAGAATGAACAGCGGCTGTGATGACGACCAAACCTCAGCTGATACATCTGCTTTATCAAAAATAACATC TACAGGTGCAATGACTTTCTGTTTCATCCAAGCCATTGAGCGTGGACAAGCGGCTACTTACGGTAGCATCCTGAATTCGATGCGTAGCGCTATCCGAGCT ACTGGAAATGACCTTGGTGGGGGTGCCGTCACTTCTGTACTCACCATGCTTCTGACAGGAGGCAGTCTTGGTGGTGGGCTGAGACAGGAGCCACAGCTAA CTTCGTGTCAGCCATTCGACGTCTACTCTCGGCCTTTCTCACTATGA
AA sequence Show only first row Show all	>Lus10042857 pacid=23181754 polypeptide=Lus10042857 locus=Lus10042857.g ID=Lus10042857.BGIv1.0 annot-version=v1.0 MSTLMLVNCSGCRTPLQLPPGARSIRCALCYAVTNIADPRSTPPPSSSPHSSLIPPSPPPSSHLPPPYQPPPPSSHLPPPYQPPPPSSHGRKKAVICGIS YRFSRHELKGCINDAKCMRHLLINKFHFPPDSILMLTEEETDPYRIPTKHNMRMALYWLVQGCQSGDSLLFHYSGHGSRQRNYNGDEVDGYDETLCPLDF ETQGMIVDDEINATIVRPLPHGVKLHAIIDACHSGTVLDLPYLCRMNSGCDDDQTSADTSALSKITSTGAMTFCFIQAIERGQAATYGSILNSMRSAIRA TGNDLGGGAVTSVLTMLLTGGSLGGGLRQEPQLTSCQPFDVYSRPFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	0	1
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	5.7	0.9178
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	5.9	0.9051
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	6.5	0.9282
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10000600 [exp]	6.6	0.9168
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	7.5	0.9126
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	7.9	0.9345
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	9.5	0.9320
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	11.4	0.8946
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	11.6	0.9079
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	11.7	0.9005

Compare expression of checked genes

Lus10042857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.