Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17080 326 / 5e-106 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 300 / 2e-96 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21920 228 / 1e-69 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 211 / 5e-63 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 96 / 9e-21 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 92 / 3e-19 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G60890 90 / 9e-19 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G56960 85 / 3e-17 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 85 / 3e-17 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT2G41210 83 / 1e-16 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028158 [exp] 499 / 3e-173 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028062 [exp] 228 / 1e-68 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 218 / 9e-65 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10029661 [exp] 96 / 1e-20 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 94 / 8e-20 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 94 / 8e-20 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10020821 [exp] 87 / 9e-18 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 86 / 2e-17 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 85 / 5e-17 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140000 [exp] 406 / 1e-137 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 387 / 5e-130 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 343 / 4e-112 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 325 / 4e-105 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 228 / 4e-69 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G175800 [exp] 222 / 7e-67 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G088100 [exp] 92 / 3e-19 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 87 / 6e-18 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 87 / 8e-18 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.019G015768 [exp] 86 / 1e-17 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10042858 pacid=23181809 polypeptide=Lus10042858 locus=Lus10042858.g ID=Lus10042858.BGIv1.0 annot-version=v1.0 ATGCATCAGAAGAAATCAGAAGTCCAAATCGGAAAAGAAAGCAGCGGCGTCTCTTCCGATTTCAACCCTTCTCCTCCCCTCCTCCTCTTCCCCTTTCCTT CTCCTTCTTCCGATCACCACCGCAACCACAGTCATCCACCACCGCCTCCTCCACCACTTCCTCAGGTTCTTGTCGAATTCTCCGCCGATATCCATCAACC GCCGAATGACCCAATCGCTCCTTCCCCTTCCTCCGCTTCTTCTGCATCTACGCCTTACAAACGCACCCTTCTGACTCACCACCACCACTCCACCGCTGCT GCTGCTGCTACCAATCCTCCGCCTCCTCCTCCTCTTCCTCGCCGCTCATCCTCCTTGTCTAAATCGCCTACAATCTACCATTTCTCCCCGGCGTCTCCTC CCAATCACCACCACCATCACCATCACCATCATCACAATCATCATCCTTTAGTTACGCTCTCAATCGCTGCTAAATCCGCCGCCCTCAAATTCCTTCGCCG TTTCCGCCACCTCCGTCGTATCCGCGTCCATCTCCGTCTCATCCTTCTCCTCTCCTTGCCCTTCTTTTACTTTCTCGTCTCCCAACCCAGCCACTCTTTC TTCCTTGACTTCTTCTCCGCCTTTGCCTTCTCTTCTGTTCTCTTGTTCTCCCTCAATCTAGCCCTCCCTCGTCTTCCTTCATTCCGGCTATTCCTCTCCC GTTCTTTCCCAATCAAGCTCACTTCCTCCGCCTCTTCTAAGATTTCCAAATCGCCCTTGCCCGTGTTCTGGTCGATTGGTTCCCGGCCCAGATCCGAGAA AAGAGTCAAGAATTCCGGGTGCTGGGTTCAGGTTTACAGCAACGGGGACGTCTACGAAGGGGAATTCCACAAGGGAAGGTGCTCTGGAAGTGGGGTTTAC TATTATTCCATGACTGGGAGGTACGAAGGGGATTGGGTTGATGGAAAATATGATGGCTATGGTGTGGAGACCTGGGCTAGAGGAAGCCGCTATAGAGGGC AGTACAGGCAAGGTGTTCGCCATGGATTTGGGGATGGAAGTAGATATGTTGGAGAATTCAAGTGGGGTGTCAAGCATGGTCTTGGCCACTACCATTTCAG AAATGGTGACACATATGCTGGAGAGTATTTTTCGGACAAGATGCATGGATTTGGGGTCTACCGTTTTGCAAATGGGCATCGATACGAGGGAGCCTGGCAT GAGGGTCGAAGGCAAGGCCTTGGAATGTATACATTCAGGAATGGGGAGACTCAATCAGGTCATTGGCAGAATGGCATTCTTGATGTCCCAAGCACTCAGA ATACAACTCCCCCCGTTTCCCCTGTTGCTGTTTATCATTCTAAAGTGCTTAATGGTGTTCAGGAAGCACGAAGAGCTGCAGAAAGAGCATATGATGTGGC AAAGGTTGACGAGAGAGTGAATAGGGCAGTAACAGCAGCAAACAGAGCGGCCAATGCAGCTAGAGTAGCTGCTGTGAAGGCAGTGCAGAAACAAATGCAT CCTAACCACCACCACCTTGATAATTCCATTCCGATTCCAATTGTGTGA
AA sequence Show only first row Show all	>Lus10042858 pacid=23181809 polypeptide=Lus10042858 locus=Lus10042858.g ID=Lus10042858.BGIv1.0 annot-version=v1.0 MHQKKSEVQIGKESSGVSSDFNPSPPLLLFPFPSPSSDHHRNHSHPPPPPPPLPQVLVEFSADIHQPPNDPIAPSPSSASSASTPYKRTLLTHHHHSTAA AAATNPPPPPPLPRRSSSLSKSPTIYHFSPASPPNHHHHHHHHHHNHHPLVTLSIAAKSAALKFLRRFRHLRRIRVHLRLILLLSLPFFYFLVSQPSHSF FLDFFSAFAFSSVLLFSLNLALPRLPSFRLFLSRSFPIKLTSSASSKISKSPLPVFWSIGSRPRSEKRVKNSGCWVQVYSNGDVYEGEFHKGRCSGSGVY YYSMTGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGVRHGFGDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFSDKMHGFGVYRFANGHRYEGAWH EGRRQGLGMYTFRNGETQSGHWQNGILDVPSTQNTTPPVSPVAVYHSKVLNGVQEARRAAERAYDVAKVDERVNRAVTAANRAANAARVAAVKAVQKQMH PNHHHLDNSIPIPIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	0	1
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	4.0	0.8508
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	8.5	0.8230
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10026667 [exp]	9.8	0.7818
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	11.6	0.8183
AT2G37035			unknown protein		Lus10013807 [exp]	13.6	0.7634
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	16.7	0.8110
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	20.8	0.8079
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	20.8	0.8322
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	22.3	0.8008
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	25.7	0.7728

Compare expression of checked genes

Lus10042858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.