Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44680 419 / 3e-149 CKB4 casein kinase II beta subunit 4 (.1.2) AT5G47080 406 / 3e-144 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT4G17640 391 / 3e-138 CKB2 casein kinase II beta chain 2 (.1.2) AT3G60250 376 / 1e-132 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028159 [exp] 499 / 0 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10028160 [exp] 489 / 8e-177 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2) Lus10028161 [exp] 486 / 1e-175 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2) Lus10042861 [exp] 483 / 2e-174 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2) Lus10042860 [exp] 410 / 9e-147 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052100 [exp] 445 / 2e-159 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 442 / 4e-158 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2) Potri.001G149600 [exp] 389 / 2e-137 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4) Potri.003G084900 [exp] 377 / 1e-132 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [flax] [poplar] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10042859 pacid=23181916 polypeptide=Lus10042859 locus=Lus10042859.g ID=Lus10042859.BGIv1.0 annot-version=v1.0 ATGTATAGGGATCGAGGAGGATCTGCAATTGGTTCATCGCGGACGGAGCTAGTCGGAGGAACTCTCGATCGGAAACGCATCAACGATGCGCTCGACAAGC ATCTTGAGAAATCGTCCCCGTCGACTTCTAGGGGTTTGATCAGCAAGGACAAATTGCAGCTGGATTCTCGCATGGCTTCTCATTCCAAGGACAAGTGTTC CGATGCAGAGGAATCTGAGACTGATAGCGAGGAGTCAGATGTTAGTGGTTCTGATGCAGAAGATACATCCTGGATTTCATGGTTCTGCAATCTGCGAGGA AATGAATTTTTCTGTGAAGTTGATGACGACTACATCCAGGATGATTTCAACCTTTGTGGATTGAGCAGTCAAGTCCCATATTATGACTATGCACTTGATC TAATATTGGATGTGGAATCATCGCATGGTGATACATTCACTGAGGAACAGAACGAGTTGGTGGAGTCAGCTGCAGAGATGCTGTATGGTTTAATTCATTT GCGTTATATACTCACTACCAAGGGCTTGGCTGCTATGCTAGAGAAGTACAAGAACTACGACTTTGGGAGATGCCCCCGGGTTTATTGCTGTGGACAGCCC TGCCTTCCAGTAGGCCAATCCGACATTCCTCGATCAAGCACTGTGAAAATTTATTGCCCGAAATGCGAAGACATATATTACCCGCGATCAAAGTACCAAG GCAACCTTGATGGAGCATACTTTGGGACAACATTTCCTCACCTATTTCTGATGACGTACGGGCACTTGAAGCCACAGAAGGCAGCACAGAATTACGTGCC AAGAGTGTTTGGCTTCAAACTCCACAAGTCTTGA
AA sequence Show only first row Show all	>Lus10042859 pacid=23181916 polypeptide=Lus10042859 locus=Lus10042859.g ID=Lus10042859.BGIv1.0 annot-version=v1.0 MYRDRGGSAIGSSRTELVGGTLDRKRINDALDKHLEKSSPSTSRGLISKDKLQLDSRMASHSKDKCSDAEESETDSEESDVSGSDAEDTSWISWFCNLRG NEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELVESAAEMLYGLIHLRYILTTKGLAAMLEKYKNYDFGRCPRVYCCGQP CLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYGHLKPQKAAQNYVPRVFGFKLHKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	0	1
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	2.4	0.8415
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	2.6	0.8080
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	2.8	0.8416
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	6.7	0.8190
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	6.9	0.7843
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	7.5	0.8225
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	7.5	0.8064
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	7.5	0.7786
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	7.9	0.7746
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	8.5	0.7885

Compare expression of checked genes

Lus10042859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.