Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17640 381 / 2e-135 CKB2 casein kinase II beta chain 2 (.1.2) AT5G47080 379 / 1e-134 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT2G44680 371 / 2e-131 CKB4 casein kinase II beta subunit 4 (.1.2) AT3G60250 353 / 1e-124 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028159 [exp] 410 / 5e-147 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10042859 [exp] 410 / 6e-147 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2) Lus10028160 [exp] 409 / 5e-146 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2) Lus10042861 [exp] 409 / 5e-146 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2) Lus10028161 [exp] 405 / 7e-145 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052100 [exp] 390 / 9e-139 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 389 / 4e-138 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2) Potri.001G149600 [exp] 374 / 1e-132 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4) Potri.003G084900 [exp] 349 / 8e-123 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [flax] [poplar] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10042860 pacid=23181727 polypeptide=Lus10042860 locus=Lus10042860.g ID=Lus10042860.BGIv1.0 annot-version=v1.0 ATGGCTTCCAATTCCAAGGACAAGTGCTCCGATGCAGAGGAATCGGAGACTGATAGCGAGGAGTCAGATGTTAGTGGTTCTGATGCGGAAGACACGTCCT GGATTTCATGGTTCTGCAATCTGCGAGGAAATGAATTTTTCTGTGAAGTTGATGATGACTATATCCAGGACGATTTCAATCTTTGTGGATTGAGCAGTCA AGTCCCGTATTATGATTATGCACTTGATCTAATATTGGATGTGGAATCATCGCATGGTGATACATTCACTGAGGAGCAGAATGAGTTGGTGGAGTCAGCT GCAGAGATGCTGTATGGTTTAATTCATTTGCGTTATATACTCACTAGCAAGGGCTTGGCTGCTATGCTAGAGAAGTACAAGAACTACGACTTTGGGAGAT GCCCCCGGGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTAGGTCAATCCGACATTCCTCGATCAAGCACTGTGAAAATTTATTGCCCGAAATGCGAAGA CATATATTACCCGCGATCAAAGTACCAAGGCAACCTGGATGGAGCATACTTTGGGACAACATTTCCTCATCTGTTTCTGATGACGTACGGGCACTTGAAG CCACAAAAGGCAGCACAGAATTACGTGCCAAGAGTGTTTGGCTTCAAACTCCACAAGTCTTGA
AA sequence Show only first row Show all	>Lus10042860 pacid=23181727 polypeptide=Lus10042860 locus=Lus10042860.g ID=Lus10042860.BGIv1.0 annot-version=v1.0 MASNSKDKCSDAEESETDSEESDVSGSDAEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELVESA AEMLYGLIHLRYILTSKGLAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYGHLK PQKAAQNYVPRVFGFKLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47080		CKB1	casein kinase II beta chain 1...		Lus10042860 [exp]	0	1
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	80.6	0.5476
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	92.3	0.5395
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	130.5	0.5113

Compare expression of checked genes

Lus10042860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.