Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44680 417 / 2e-148 CKB4 casein kinase II beta subunit 4 (.1.2) AT5G47080 395 / 2e-139 CKB1 casein kinase II beta chain 1 (.1.2.3.4) AT4G17640 384 / 3e-135 CKB2 casein kinase II beta chain 2 (.1.2) AT3G60250 377 / 1e-132 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028160 [exp] 515 / 0 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2) Lus10028161 [exp] 515 / 0 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2) Lus10028159 [exp] 485 / 3e-175 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2) Lus10042859 [exp] 485 / 4e-175 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2) Lus10042860 [exp] 406 / 6e-145 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052100 [exp] 454 / 8e-163 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2) Potri.002G139900 [exp] 451 / 2e-161 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2) Potri.001G149600 [exp] 377 / 1e-132 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4) Potri.003G084900 [exp] 364 / 2e-127 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01214 [flax] [poplar] CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence Show only first row Show all	>Lus10042861 pacid=23181875 polypeptide=Lus10042861 locus=Lus10042861.g ID=Lus10042861.BGIv1.0 annot-version=v1.0 ATGTATAGGGATCGAGGAGGATCGGGCATTGGTTCATCGCGGTCGGAGCTAGTCGGAGGAACTCTCGACCGGAAGCGCATCAACGATGCGCTCGACAAGC ATCTCGAGAAATCGTCCCCGTCGACTTCTAGGGGTTTGATCAGCAAGGACAAAGAGAGGCTTTCCGTACATCCCAATTCCGCTGACAAATTGCCGCTCGA TTCTCGCATGGCTTCTCATTCCAAGGACAAGTGCTCCGATGCAGAGGAATCTGAGACTGATAGTGAGGAGTCAGACGTAGATAGTGAGGAGTCAGACGTT AGTGGTTCTGATGCGGAAGACACATCCTGGATTTCATGGTTCTGCAACCTGCGAGGAAATGAATTTTTCTGTGAAGTTGATGATGACTATATCCAGGATG ATTTCAATCTTTGTGGATTGAGCAGTCAAGTCCCGTATTATGATTATGCACTTGATCTAATATTGGATGTGGAATCCTCTCATGGTGATACATTCACTGA GGAGCAGAATGAGTTGGTGGAGTCAGCTGCAGAGATGCTGTATGGGTTAATTCATTTGCGTTATATACTCACTAGCAAGGGCTTGGCTGCTATGCTAGAG AAGTACAAGAACTACGACTTTGGGAGATGCCCCCGAGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTAGGTCAATCTGACATTCCTCGATCAAGCACTG TGAAAATTTATTGCCCGAAATGCGAAGACATATATTACCCACGATCGAAGTACCAAGGCAACCTTGATGGAGCATACTTCGGGACAACATTTCCTCATCT GTTTCTGATGACATACGGCCACTTGAAGCCACAAAAGGCAGCACAGAATTATGTACCAAGAGTGTTCGGCTTCAAACTCCACAAGTCTTGA
AA sequence Show only first row Show all	>Lus10042861 pacid=23181875 polypeptide=Lus10042861 locus=Lus10042861.g ID=Lus10042861.BGIv1.0 annot-version=v1.0 MYRDRGGSGIGSSRSELVGGTLDRKRINDALDKHLEKSSPSTSRGLISKDKERLSVHPNSADKLPLDSRMASHSKDKCSDAEESETDSEESDVDSEESDV SGSDAEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELVESAAEMLYGLIHLRYILTSKGLAAMLE KYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYGHLKPQKAAQNYVPRVFGFKLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042861 [exp]	0	1
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	6.0	0.7638
AT1G67170			unknown protein		Lus10019966 [exp]	8.1	0.8166
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	15.5	0.7597
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	18.0	0.7767
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	20.5	0.7708
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	21.4	0.7989
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	23.6	0.7825
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	26.9	0.7884
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	32.6	0.7469
AT5G22280			unknown protein		Lus10016983 [exp]	40.8	0.7431

Compare expression of checked genes

Lus10042861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.