Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15220 733 / 0 Protein kinase superfamily protein (.1) AT1G53165 667 / 0 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 226 / 2e-63 SIK1 Protein kinase superfamily protein (.1.2) AT5G14720 183 / 4e-49 Protein kinase superfamily protein (.1) AT1G79640 181 / 4e-48 Protein kinase superfamily protein (.1.2) AT4G10730 179 / 1e-47 Protein kinase superfamily protein (.1) AT4G24100 174 / 9e-46 Protein kinase superfamily protein (.1) AT1G63700 164 / 6e-42 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 159 / 3e-41 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G70430 157 / 2e-40 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028163 [exp] 998 / 0 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036915 [exp] 224 / 2e-62 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037070 [exp] 223 / 4e-62 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033230 [exp] 185 / 2e-49 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 185 / 2e-49 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 184 / 4e-49 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 182 / 1e-48 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 181 / 2e-47 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 175 / 4e-46 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116300 [exp] 867 / 0 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 855 / 0 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 223 / 2e-62 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 188 / 1e-50 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 187 / 3e-50 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 187 / 3e-50 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 185 / 1e-49 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 180 / 6e-48 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G102900 [exp] 168 / 3e-43 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 162 / 2e-41 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042862 pacid=23181937 polypeptide=Lus10042862 locus=Lus10042862.g ID=Lus10042862.BGIv1.0 annot-version=v1.0 ATGGCAGATGCAGCAGGCTTAATGGAGGCCGCTGGAACTCGATTTATTTCCTTGGAGTTGATTGGAAGAGGATCATTTGGAGATGTTTATAAAGCGTTTG ATAAGGACCTTAACAAAGAAGTAGCCATCAAAGTCATTGATTTGGAAGAATCTGAGGATGACATTGAGGATATCCAGAAGGAAATTGCTGTTTTGTCACA ATGTCGGTGTCCATATATAACTGAGTATTATGGCTCCTATCTTCAGCAGACTAAACTATGGATAATTATGGAATACATGGCTGGGGGGTCCGTTGCTGAC CTACTTCAGTCAGGTCCACCGCTTGATGAAACCTCAATGGCTTCTATTTTGCGTGATTTGCTTCATGCAGTTGAATATTTGCATAATGAAGGGAAAATTC ACAGGGATATCAAAGATTGGATAAATAAAGAAATATCTCCCCTGAAGCTTGGTATAGGCATTGTAGAAACCAAGCTTGGATTTCAAGTTGCAGATTTTGG CGTTTCTGCACAACTTACGAGGACAATCTCCAGAAGAAAGACTTTTGTTGGCACACCCTTTTGGATGGCTCCAGAGGTGATTCAGAATTCAGATGGATAC AACGAGAAGGCTGATATCTGGTCTCTTGGGATAACTGCTATTGAGATGGCGAAGGGGGAACCTCCTCTTGCTGATCTGCACCCAATGAGGGTCCTTTTCA TCATTCCACGAGAAAATCCCCCACAGCTGGATGAACATTTTTCTCGTCCTATGAAAGAGTTTGTTTCTATGTGCCTAAAGAAAGCTCCTGCTGAGGCAAG TAATTCACTCCCGCCAAGTGCTAAGGAACTCCTGAAGCACCGGTTTGTTAAAAATGTTAAAAAGAGCCCAAGGCTTGTCGAGAGAATAAGGGAGCGTCCA AAGTATCCAATTAAAGATGGAGATAGCCCCAAAAATGGTTCAGAAGCAAGAGCGGAAGCGTACGACACTGTGAAGGTGACAAGGGATGTAAGACCAGATG GAACCGTTAAAGCCAGTGGTCCAGCAAAGCCCCTGAAAAATGCTGGTTGGGACTTTAGCATCGGTGGAGCACAGAGTACAGGAACTGTTAGGAGTTCTGT TAGGCCACCTCAGGTTAAAGAAAAGAAAATAGATTCCACATACAGTAAGGTCAGTCAAAGAGGGACATTGGCCCGTGGTACTCCCTTGGTAGCTTCATCT GAGAATCCAGTTCAGGAAACAATTGAACCTTCCCGTGTAAAACTTTCTCGAGATTCATATTATGATGATCATCCGGATAATTTTGCTGACGATAATGACT TTGCTGTAAGTGGTTCTGGGACTCTGGTTATACGCTCTCCTAAAGGATCTCAGTCGTCTTCTACTCGAGATCAGAGTACCCCATCTAGCAGTGCGCTAGC TTCCTTTGATGATGCATCTACGAGTGGAACTGTTGTTTTTCGTGGGCAGCATGATGATTCTGATTCTCCCCGGACTCCTAGATCTAGACTGGGAATACAA GAGAGAAGCTCAAGTGCTTCACAAGAAGACAGTGCATTTAACCTGGCTGAGGCAAAAGCTGCATTGCAGAGTGGCCTAAGAAAAGGAAATGCTAGAGAAA GGTCCGCTTTCGGCAAGATGAACAATAACGGACATGAAAGTAGAAGAAAAAAGACGAATATCAACAACACTGACTCTACACTTACAAACAGCTCTGACTC TACCAGTTCTCAAGACTACCTTGATGCTCAGAAAGCATTTGCAAAATCACGCAAATCAAGTAATGAGGAGGAAAGTGCAAGAGTAATCTCGTCATCAGCA CCCTTATCAATTTTACTCGTACCTTCCTTGAAAGAGGCAGGTGGGCACGATTTAGAAGGATCCGGAGTGCGTGCAGTAATGAATTCACTTGCAAATATGG AGCGGATGAAACCCGGGTCTTGTGAAATTCTTGTTAGAAGTTTACTCCAGAGATTGTCAAGTTCAAAGGAAGCTTCCATGAAAGATTTACAGGAGTTGGC AGCTTCATTGTTGGCCAAGGGCAAGGCCAATGCTGAAGAAGCTCAAAATGCTGCTAGGAAGCAACAGAACAAAGATCTCAATTCAAATCCCAATCTTAGC CCTTTGGCTAGGTTTCTGCTCTCCAGATGGCAAGGCCGAGATGTATAA
AA sequence Show only first row Show all	>Lus10042862 pacid=23181937 polypeptide=Lus10042862 locus=Lus10042862.g ID=Lus10042862.BGIv1.0 annot-version=v1.0 MADAAGLMEAAGTRFISLELIGRGSFGDVYKAFDKDLNKEVAIKVIDLEESEDDIEDIQKEIAVLSQCRCPYITEYYGSYLQQTKLWIIMEYMAGGSVAD LLQSGPPLDETSMASILRDLLHAVEYLHNEGKIHRDIKDWINKEISPLKLGIGIVETKLGFQVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGY NEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSMCLKKAPAEASNSLPPSAKELLKHRFVKNVKKSPRLVERIRERP KYPIKDGDSPKNGSEARAEAYDTVKVTRDVRPDGTVKASGPAKPLKNAGWDFSIGGAQSTGTVRSSVRPPQVKEKKIDSTYSKVSQRGTLARGTPLVASS ENPVQETIEPSRVKLSRDSYYDDHPDNFADDNDFAVSGSGTLVIRSPKGSQSSSTRDQSTPSSSALASFDDASTSGTVVFRGQHDDSDSPRTPRSRLGIQ ERSSSASQEDSAFNLAEAKAALQSGLRKGNARERSAFGKMNNNGHESRRKKTNINNTDSTLTNSSDSTSSQDYLDAQKAFAKSRKSSNEEESARVISSSA PLSILLVPSLKEAGGHDLEGSGVRAVMNSLANMERMKPGSCEILVRSLLQRLSSSKEASMKDLQELAASLLAKGKANAEEAQNAARKQQNKDLNSNPNLS PLARFLLSRWQGRDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	0	1
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	1.0	0.9717
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	6.3	0.8958
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	8.0	0.8963
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	8.5	0.9063
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	8.8	0.9020
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	12.4	0.8839
AT3G01810			unknown protein		Lus10015805 [exp]	13.0	0.8915
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	14.0	0.8910
AT1G63300			Myosin heavy chain-related pro...		Lus10017237 [exp]	15.9	0.8207
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	21.7	0.8822

Compare expression of checked genes

Lus10042862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.