Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27540 258 / 7e-87 PRA1.H prenylated RAB acceptor 1.H (.1) AT1G04260 40 / 0.0006 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028164 [exp] 404 / 2e-144 AT4G27540 258 / 4e-87 prenylated RAB acceptor 1.H (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G396900 [exp] 291 / 5e-100 AT4G27540 256 / 2e-86 prenylated RAB acceptor 1.H (.1) Potri.011G116200 [exp] 276 / 3e-94 AT4G27540 268 / 3e-91 prenylated RAB acceptor 1.H (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10042863 pacid=23182063 polypeptide=Lus10042863 locus=Lus10042863.g ID=Lus10042863.BGIv1.0 annot-version=v1.0 ATGGTGTTCTCGGCTAACCCCTTATCCGCAAGCGTTCCAGACGCAGCCTTCGAGTCCTGGCTCCGCGACTCCGGCTACCTCGAGCTAATCGACCAACACT CTTCCTCCTCCTCTTCCGCGCCCACCGGCACTTCCTCCTCCGCCGCCGCCAGCTCCAGCTCTAATAACGATGTCGTCGCCGCCGCCACTGCCTCTTGTTC TGATGCCTCCATAACCGGTGGAATTTTCGACTCCTTGTTTTCGGAAATTCTGATTCTTCTCTCCGTCTTCACTATCAATCCTTTCTCCAAGCTCGCTGCC CAGGATTTTTCCGTTGCGACCCCTTCCTGGACCTCCGCCTTCATCGGGGATTGCACTTGTTACTCCCTTCCTGGCGGCTCCGATCAGGCCAGACTCCGGC TTCAAGAGAATGTTAAGCGTTACGCCAAAAACTATGCAAGTCTCTTCGTCACCTTCTTCGCCTGTACTCTGTACCAAATGCCACTAGCTCTCATTGGGTT AATATCATGTTTGGGAATTTGGGAGATGTTCAGGTTTTCTAATGAAAGATGGGGGTGGGATAGGCACCCTCTGTTTCAGCAGGTTTTGGTCCGCTCTGCT CAATGTGCGACTGCAGTTATTCTGATAATGCTGAACGTTCCAAAGGCTCTCATTTGTGCGGTTGCTGTGAGCTATGCAGTAATGATTTTGCACGCATCCT TCCGGAAACTTACTTCGCCAAGGCAGCCTCCCAGGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10042863 pacid=23182063 polypeptide=Lus10042863 locus=Lus10042863.g ID=Lus10042863.BGIv1.0 annot-version=v1.0 MVFSANPLSASVPDAAFESWLRDSGYLELIDQHSSSSSSAPTGTSSSAAASSSSNNDVVAAATASCSDASITGGIFDSLFSEILILLSVFTINPFSKLAA QDFSVATPSWTSAFIGDCTCYSLPGGSDQARLRLQENVKRYAKNYASLFVTFFACTLYQMPLALIGLISCLGIWEMFRFSNERWGWDRHPLFQQVLVRSA QCATAVILIMLNVPKALICAVAVSYAVMILHASFRKLTSPRQPPRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10042863 [exp]	0	1
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040982 [exp]	3.0	0.8115
AT1G55365			unknown protein		Lus10010316 [exp]	3.2	0.7520
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	11.7	0.7241
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	16.1	0.7178
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	19.9	0.6858
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	22.4	0.7336
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	24.8	0.7140
AT2G35200			unknown protein		Lus10036051 [exp]	30.3	0.7052
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	39.3	0.7010
AT4G13200			unknown protein		Lus10011869 [exp]	43.8	0.7117

Compare expression of checked genes

Lus10042863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.