Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24470 130 / 1e-35 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT3G21175 119 / 1e-31 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 119 / 2e-31 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT2G46670 50 / 3e-07 CCT motif family protein (.1) AT2G46790 50 / 1e-06 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G02810 50 / 1e-06 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G60100 47 / 9e-06 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G24470 46 / 2e-05 APRR5 pseudo-response regulator 5 (.1) AT5G61380 45 / 5e-05 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT4G14713 42 / 0.0003 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 275 / 3e-88 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 194 / 2e-60 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 193 / 4e-60 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10023230 [exp] 53 / 2e-07 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10019077 [exp] 52 / 3e-07 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10008878 [exp] 52 / 4e-07 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10015720 [exp] 51 / 8e-07 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 50 / 8e-07 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10032934 [exp] 50 / 1e-06 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110900 [exp] 179 / 2e-54 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.005G152800 [exp] 175 / 4e-53 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.002G110800 [exp] 164 / 3e-48 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 156 / 5e-45 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 131 / 2e-35 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 130 / 7e-35 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 122 / 1e-32 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.007G116550 [exp] 122 / 2e-32 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.015G061900 [exp] 54 / 4e-08 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.010G215200 [exp] 54 / 6e-08 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10042865 pacid=23181940 polypeptide=Lus10042865 locus=Lus10042865.g ID=Lus10042865.BGIv1.0 annot-version=v1.0 ATGGATATTCCTCACCAGATTGACGTCGTCCCCGGTCCCGGCGAAGACGACGATCCTGCTGGGGCACCGGATTGTATGGGCCAGCAAAACCACATTGGAT ATGATGACGCTTCCGCCGCCGCCGCTGGAATCGTCGTCGACAACATGTCTCCTGACTCCGTATATGTTTCTACCGGTGGTGGCCCTGGCTCGGAGTTTGG TTTCCAGGGCGGGGATATCACCAACCAGCTTACTTTGACGTTTCGTGGCCAGGTTTATGTGTTTGACGACATCACTCCAGACAGGGTTCAGGCAGTGCTA TTACTTCTAGGAGGGTGTGAAGTAAATGCAGGTCTGTATGGCATGGATGTCGCACCTCAAAGCCAAAAGGGCCAGGTGATGGAATATCCAGGGCGTTCTA CACAACCTCATAGAGAAGCATCGTTAAATAGATTTAGACAGAAGAGGAAAGAACGATGTTTTGATAAAAAAGTCAGATATGGCGTTCGGCAACAGGTTGC ACAAAGGCCATGGGGGATTTCTCCAAAACGCTCTAATCTTTCGCGTCGAATAGCATCCCTTGTCAGTTTCCGGGAGAAGAGGAAGGAGCAATGTCTCGAC AAGAAAATACGATACACTGTCCGAAAAGAAGTTGCACAGAGGCTTAGGAGGTGTCAACATTGTGGTGTAAGTGAGAAGAATACTCCTGCAATGCGACGTG GACCAGCTGGAAGAATACTCCTGCAATGCGACGTGGACCAGCTGGACCAAGAACTTTATGTAATGCATGCGGCCTCATGTGGGCAAATACGGTCTGGTAC CCTCAGAGATCTCAGTAAAGGTGGAAGGAGTCTTCCTGCAGATCAAGTTGAACCTGTATGTAAAGAGTGGCTACTCATGTACTTTTATATTTGCTTCTGG GATTTCTCAGCATGA
AA sequence Show only first row Show all	>Lus10042865 pacid=23181940 polypeptide=Lus10042865 locus=Lus10042865.g ID=Lus10042865.BGIv1.0 annot-version=v1.0 MDIPHQIDVVPGPGEDDDPAGAPDCMGQQNHIGYDDASAAAAGIVVDNMSPDSVYVSTGGGPGSEFGFQGGDITNQLTLTFRGQVYVFDDITPDRVQAVL LLLGGCEVNAGLYGMDVAPQSQKGQVMEYPGRSTQPHREASLNRFRQKRKERCFDKKVRYGVRQQVAQRPWGISPKRSNLSRRIASLVSFREKRKEQCLD KKIRYTVRKEVAQRLRRCQHCGVSEKNTPAMRRGPAGRILLQCDVDQLDQELYVMHAASCGQIRSGTLRDLSKGGRSLPADQVEPVCKEWLLMYFYICFW DFSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	0	1
					Lus10042563 [exp]	1.0	0.8966
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	3.0	0.8617
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	3.5	0.8678
AT3G10405			unknown protein		Lus10038692 [exp]	6.1	0.7794
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	7.5	0.8288
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	8.1	0.8297
					Lus10016908 [exp]	8.5	0.8120
AT1G56130			Leucine-rich repeat transmembr...		Lus10005375 [exp]	10.1	0.7834
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Lus10036206 [exp]	11.2	0.8197
					Lus10026028 [exp]	14.0	0.7721

Compare expression of checked genes

Lus10042865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.