Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24480 928 / 0 Protein kinase superfamily protein (.1) AT5G03730 550 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G73660 331 / 5e-98 protein tyrosine kinase family protein (.1) AT1G18160 329 / 1e-97 Protein kinase superfamily protein (.1) AT5G11850 322 / 8e-96 Protein kinase superfamily protein (.1) AT1G08720 317 / 1e-93 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 288 / 1e-87 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT4G23050 289 / 5e-85 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 287 / 4e-84 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 283 / 1e-83 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028169 [exp] 1171 / 0 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10023865 [exp] 543 / 5e-180 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10028168 [exp] 491 / 5e-167 AT4G24480 134 / 2e-34 Protein kinase superfamily protein (.1) Lus10034154 [exp] 404 / 1e-128 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 355 / 4e-108 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 332 / 9e-100 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 333 / 3e-99 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10043428 [exp] 328 / 3e-98 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10000937 [exp] 322 / 3e-96 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111200 [exp] 1079 / 0 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 1008 / 0 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 551 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 549 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 456 / 1e-148 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.015G040100 [exp] 337 / 8e-100 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 332 / 2e-98 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 326 / 1e-96 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 324 / 5e-96 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 322 / 3e-95 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042868 pacid=23181772 polypeptide=Lus10042868 locus=Lus10042868.g ID=Lus10042868.BGIv1.0 annot-version=v1.0 ATGCCTCATAGAACGACTTACGTCTTCCCGAGGCAATTCCCGGATCGGCCCTGTCCTTTCGGCGCGTCGTCGTCGTCGAAGAAGCTGTTGGATCACGAGA AGAAGCCAAAAGCGTCACCCGAAGAGAGCGAAAATGATGGGAGGGGGGTCCACCGCAAGTCTTCGGACTCTCCCGCGGTTGGCGGCCTAAACTCACCAGC AGCGAAAGCGACACCGTTCCTAGCCACCTCTTCGCCGCTCGCCGATCTCTTTACCACCAGCGATGACGAGAAGTATCACCGAAAGGAAAAATACCATGGG GTCGAGGAGGAGAAGCTCCGGAAGAAGAAGAAGAAGCAACAAGCTGCTTTCTGCGACTGGTTGGCTGAGAAAAAGATCGAGAGGTCCAAATCCGGTCATG TGAAATTGAAGAGCAGATTGTCCAGGAGCGATTATGACGACGATGATGTACCCGACGGTCAGCGGTGTACTATGGCGGTGGCATCACCGGACCCAGAGCC TGAGCCTGAAGTTCCGGTACCGGAGAAAGTAACCGAAGAGGTTTTTGGTGTCAAGTTGAGGAGCAGATTGTCGACTGATCATGAAGACGAAGAGACTGCG CACTTGCTGCAGGCGGCGCCGGAATCAGATATGAGGGTTCCGGATATAGTCATAAAGGATCACAGAGATGCTGACCGGAACTTTGACAGACAGGTTTCGC TGCCGCGATTTTCGAGCGGGAGTAGTTATGCTGGGAGCTTGTTCTCCGGGACTACGCTCGATGGAACCTTCACGTTCTCCAGCGATCTCAAGGACACAAC CACCGCCGCTGCTGCGGAGGTGCAGACGTTGAGGCAGGATGGTGTGGCGCAACAAGTGGCGGAGGAGGTGGAGAGAAGTGTGAAGAACTTGGCGCAGAAG ACGAAAGAGAGTTATTGTCTGCAGCTTGGTTTGGCTAGGAGGCTGAGTTGGCAAGCTGGTATTTCGAGCCAGCTCTTGCTATTGAAGGAAGGTGTGGATG AGATTCCTGATGTTGAGGCGGTTTCGTACAGGCTCTGGGTCAGTGGCTGTTTATCGTACAAGGATAAAATTACAGATGGTTTCTATAATATCCTAGGGAT GAATCCGTATCTTTGGGTTATGTGCAACGACGAGGATGAAGGGAAAAAGCTGCCGTCTCTTATGGCGCTAAGAGAAATTGATTCTAGTAATACTACGATG GAGGTGGTTCTTGTGGATAAGCGTGCTGATTCACGTCTTAGGGAGCTCGAGGATAAAGCTCAAGAGCTTTTTTCTGCCTCGGAAAATACGTTGGTGTTAG TGGAGAAGTTGGGTAAACTTGTTGCTATTTGCATGGGGAGGAATTTTCCGATGGAGCAGGGTGATCTGCAGCAGCGCTGGAAAATGGTTAGTGGAAGATT AAGGAAATTCCACAAGTGTATTGTTCTCCCGATTGGCAACCTATCCATGGGACTTTGCAGGCATCGTGCTATTCTTTTTAAGAAATTGGCGGATTATATA GGCTTGCCATGTCGTATAGCTCGAGGCTGCAAGTACTGTGTAGCAGATCACAGGTCTTCTTGCCTAGTCAAAATCGAGGATGACAGACAGTTTTCACGGG AGTTCGTAGTTGATCTTGTTGGGCAGCCAGGGAACATCCATGGTCCTGATTCAACAATTAATGGAGGATTCACTTCTTCAATGCCATCGCCATTTCAGAT TTCTCATCTAAGAGAATACCAGCACCCATACACGGATGATGTGTCATCTCAACTTGTGGGCTCAAGGAAGTTGGGGGCAAATGAAGAAAGCCAGAAAGCT TTTGAAATGACACATGTTTGTGGTTTCAACGGAGTGGAAAGAACTTGCGTTGAAATAAAATCTTCAGTGATGCGCTTAGATTTGGATGCGAACGCTGAAG TTTTCGATGCAGCTAGGCTTGGCCAAAAGAGCTTGATATCCCATACAAATATAAACCTTTTGATGGAGTCAGATGTCAAACAAGTGCAAAGCGAGCCTGA TAACAGAGGCAGGATGTCAACTATCACTGATCCAAAGTTTTTGAACCTGGAGCCTTCACTTGCAATGGACTGGCTTGAGATTGCATGGGATGAACTGCAT ATTAAAGAGCGTATTGGTGCTGGCTCATTTGGGACAGTGCATCGTGCTGAATGGCATGGATCGGTTTCAATCATGAAACGTGTCCGCCATCCAAATGTGG TTCTGTTCATGGGTGCTGTCACAAAGCGTCCTCATCTATCTATAGTAACAGAGTACCTACCAAGGGGTAGTCTGTACCGTCTTATACACAGGCCAGCTGC AGGGGAAGTAATGGACCAAAGGAGGCGGTTAAGAATGGCACTGGATGTGGCAAAAGGCGTCAATTATCTGCATTGTCTTAACCCTCCAATTGTTCACTGG GACCTAAAATCTCCAAATTTGTTGGTCGATAAAAATTGGACGGTGAAGGTGTGTGATTTTGGGCTGTCTAGATTCAAAGCCAGCACTTTCATACCATCAA AATCAGTAGCTGGAACGCCGGAGTGGATGGCTCCAGAGTTCCTTCGTGGAGAGCCTTCAAATGAGAAATCTGACGTTTACAGTTTTGGAGTCATATTGTG GGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTTGGACCCGCCCAGGTGGTTGGAGCAGTAGCCTTCCAAAACCGAAGGCTTTCTATCCCACCGAAA ACCTCTCCCCTGTTAGTTTCTCTTATGGAAGCTTGTTGGGCAGATGATGCTGCTCAAAGGCCGACATTCCGAAGCATAGTTGATTCATTGAAGAAGTTGC TAAAGTCCCCAGAGAAGTTGATACATATGGGCGAGGCGGGGGAGTAG
AA sequence Show only first row Show all	>Lus10042868 pacid=23181772 polypeptide=Lus10042868 locus=Lus10042868.g ID=Lus10042868.BGIv1.0 annot-version=v1.0 MPHRTTYVFPRQFPDRPCPFGASSSSKKLLDHEKKPKASPEESENDGRGVHRKSSDSPAVGGLNSPAAKATPFLATSSPLADLFTTSDDEKYHRKEKYHG VEEEKLRKKKKKQQAAFCDWLAEKKIERSKSGHVKLKSRLSRSDYDDDDVPDGQRCTMAVASPDPEPEPEVPVPEKVTEEVFGVKLRSRLSTDHEDEETA HLLQAAPESDMRVPDIVIKDHRDADRNFDRQVSLPRFSSGSSYAGSLFSGTTLDGTFTFSSDLKDTTTAAAAEVQTLRQDGVAQQVAEEVERSVKNLAQK TKESYCLQLGLARRLSWQAGISSQLLLLKEGVDEIPDVEAVSYRLWVSGCLSYKDKITDGFYNILGMNPYLWVMCNDEDEGKKLPSLMALREIDSSNTTM EVVLVDKRADSRLRELEDKAQELFSASENTLVLVEKLGKLVAICMGRNFPMEQGDLQQRWKMVSGRLRKFHKCIVLPIGNLSMGLCRHRAILFKKLADYI GLPCRIARGCKYCVADHRSSCLVKIEDDRQFSREFVVDLVGQPGNIHGPDSTINGGFTSSMPSPFQISHLREYQHPYTDDVSSQLVGSRKLGANEESQKA FEMTHVCGFNGVERTCVEIKSSVMRLDLDANAEVFDAARLGQKSLISHTNINLLMESDVKQVQSEPDNRGRMSTITDPKFLNLEPSLAMDWLEIAWDELH IKERIGAGSFGTVHRAEWHGSVSIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPAAGEVMDQRRRLRMALDVAKGVNYLHCLNPPIVHW DLKSPNLLVDKNWTVKVCDFGLSRFKASTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLGPAQVVGAVAFQNRRLSIPPK TSPLLVSLMEACWADDAAQRPTFRSIVDSLKKLLKSPEKLIHMGEAGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	0	1
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	4.6	0.9253
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	4.9	0.9067
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	5.3	0.9134
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	6.7	0.9063
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	6.7	0.8894
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	6.7	0.9083
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	7.7	0.8864
AT4G24480			Protein kinase superfamily pro...		Lus10028169 [exp]	9.5	0.8982
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	13.1	0.8747
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	13.4	0.8885

Compare expression of checked genes

Lus10042868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.