Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57380 211 / 2e-61 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT4G30200 192 / 2e-54 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT3G24440 186 / 5e-52 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18880 176 / 6e-49 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 56 / 2e-08 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 56 / 6e-08 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 52 / 5e-07 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 45 / 7e-05 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT1G14740 45 / 8e-05 Protein of unknown function (DUF1423) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028170 [exp] 735 / 0 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 184 / 5e-51 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019393 [exp] 167 / 2e-45 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 166 / 7e-45 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 141 / 6e-36 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 134 / 8e-35 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 105 / 6e-24 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10012327 [exp] 53 / 5e-07 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 53 / 5e-07 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111600 [exp] 391 / 3e-131 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.018G091500 [exp] 245 / 8e-73 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 238 / 2e-70 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 174 / 2e-47 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 171 / 4e-46 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.002G221500 [exp] 51 / 1e-06 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 50 / 2e-06 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 49 / 7e-06 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 49 / 8e-06 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 47 / 3e-05 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10042869 pacid=23181959 polypeptide=Lus10042869 locus=Lus10042869.g ID=Lus10042869.BGIv1.0 annot-version=v1.0 ATGGATCGCGAGAAGCTCATTAGCCGCAGCCGGTCTAAGAAGGAAGACCCATTCCTTGTTCAAGAGGCCTTTTCGAGTTGGTTGCTTACCCAGACCGGGT TTAAGGGAATGTTGTGTGTTGTTGACCTAGAGCAATGCAGTAAACTGAGCTTTGAAGAGAAAAGGGATCTGGCTTGCAAAATTGCTGGATGGGCCAACAA CGATGCATGTGAGACTCTTAGTTCTTCATTCACGCGCAAGGAGCTTCGTCAGATCATATGTGCAGAGATGGGCAAAGAGAGGAAATATGCAGGGTATAAT AAGTCTCGGATGATCAACCAACTTCTAAAGGTGGTTTCTTCCAAAAATGATGGTGCCCCTGCTGGAACAAGGTTAAAGACGAAAAGGCTGAATGAATGTG AAACAGAACAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCCATGATTCTATGGAGGTGAATGAGAAAGAACAAGTCAAAGTTTGCCGAAATGCTGC ATGTCGGGCCACTTTATCTTCTGATGATGCTTTCTGCAAGAGATGTTCTTGCTGTATCTGTCATTCTTACGATGAAAACAAGGATCCCAGTCTGTGGTTA ACCTGTGCTTCTTCTTTTTGTGGGCTTACTTGCCATCTGATATGTGCTATGAAGGATTCAAGGTCTGGAATCGTCAAGACTGGTTCTTGTACAAAGTTGG AAAGATGTTTCTACTGTGTTGCTTGTGGGGAAGTCAACGAACTAATGAGAATCTGGAGAAAGCAACTTGTGATGGCCATGGAGGCTAGAAGAGTAGATGT GTTGTGTCTGCGAGTCCTTCTGGGTCAAAAGATTCTATCTGGAACTGAGAAATACTACGACATCCATGAGATGCTAGAGACTGGTGTTCAAATGTTGCAA AATGAAGTGGGACCTCTCGATCTCGTGTGCACGAAGATGGCACGGGGTATTGTCAAGAGGCTCTCTTGTGGTGCTCAGGTTCAGAAGCTGTGCGCCTCTG CACTTGAAGCTTTTGATTCCAAATCCTCTGCTGATTGTAGCAGAGATTTTCAACAGAAGAAAGAATTGACGAACCAGGGGTCATTTTCACCATCAACACC GTGCAAGTCTAACGAAAGGCAGGAGGAGGAGGATGTTTCAGGTACGGTGGGATGGAAAAGAAGAGAAGAAGAAAGCCGTTACGAGTACTCAGTAAGGGTG ATAAAGTGGCTAGAGGAACAAGGGGAAATAGAGGAAGCGTTTAGAGTGAAGTTACTGACTTGGTTTAGCCTCAAAGCATCAGATCAAGAGAGGAGGGTGG TCAATGCTTTCGTCGACACCTTGGTTGACCACCCACCAAGCTTAGCCCAGCAGCTTAAGCACTCGTTTCTGGATGAGATTACTTGTGAGCCAAGAAATAC GGTTACTGCTCAATGTGGTGGTCTCTGCTTCTGCGCTTGTAGGTTTTGA
AA sequence Show only first row Show all	>Lus10042869 pacid=23181959 polypeptide=Lus10042869 locus=Lus10042869.g ID=Lus10042869.BGIv1.0 annot-version=v1.0 MDREKLISRSRSKKEDPFLVQEAFSSWLLTQTGFKGMLCVVDLEQCSKLSFEEKRDLACKIAGWANNDACETLSSSFTRKELRQIICAEMGKERKYAGYN KSRMINQLLKVVSSKNDGAPAGTRLKTKRLNECETEQKEEEEEEEEEIHDSMEVNEKEQVKVCRNAACRATLSSDDAFCKRCSCCICHSYDENKDPSLWL TCASSFCGLTCHLICAMKDSRSGIVKTGSCTKLERCFYCVACGEVNELMRIWRKQLVMAMEARRVDVLCLRVLLGQKILSGTEKYYDIHEMLETGVQMLQ NEVGPLDLVCTKMARGIVKRLSCGAQVQKLCASALEAFDSKSSADCSRDFQQKKELTNQGSFSPSTPCKSNERQEEEDVSGTVGWKRREEESRYEYSVRV IKWLEEQGEIEEAFRVKLLTWFSLKASDQERRVVNAFVDTLVDHPPSLAQQLKHSFLDEITCEPRNTVTAQCGGLCFCACRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10042869 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	5.1	0.9395
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	7.5	0.9306
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	7.7	0.9296
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	10.4	0.9294
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	11.3	0.9228
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	11.4	0.9293
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	15.1	0.9259
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	16.1	0.9170
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	17.2	0.8933
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	18.3	0.9158

Compare expression of checked genes

Lus10042869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.