Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24510 246 / 3e-77 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT3G23840 212 / 5e-64 HXXXD-type acyl-transferase family protein (.1) AT4G13840 191 / 9e-56 HXXXD-type acyl-transferase family protein (.1) AT5G48930 59 / 2e-09 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G03390 52 / 4e-07 HXXXD-type acyl-transferase family protein (.1) AT3G30280 51 / 1e-06 HXXXD-type acyl-transferase family protein (.1) AT4G29250 49 / 3e-06 HXXXD-type acyl-transferase family protein (.1) AT4G15390 49 / 4e-06 HXXXD-type acyl-transferase family protein (.1) AT3G48720 49 / 6e-06 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G47950 46 / 3e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028171 [exp] 638 / 0 AT4G24510 289 / 8e-94 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 212 / 1e-63 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10002321 [exp] 59 / 3e-09 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 54 / 2e-07 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10040354 [exp] 54 / 2e-07 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 53 / 3e-07 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10025523 [exp] 52 / 6e-07 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10026097 [exp] 52 / 7e-07 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10021392 [exp] 52 / 8e-07 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153600 [exp] 300 / 1e-97 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 226 / 3e-69 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.003G183900 [exp] 62 / 2e-10 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 62 / 3e-10 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G034066 [exp] 58 / 2e-09 AT3G26040 163 / 2e-47 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 59 / 3e-09 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 59 / 3e-09 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 59 / 3e-09 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.011G124184 [exp] 58 / 5e-09 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 58 / 5e-09 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10042870 pacid=23181860 polypeptide=Lus10042870 locus=Lus10042870.g ID=Lus10042870.BGIv1.0 annot-version=v1.0 ATGGTATCCTCCACTACTCCAGCGCCGTCGGTGTCCGCCGCCAGGCTGTCGACAGTGGTTCCTGCATCTGTCACCGGAGAAAACAAAAAGGAGTGGCGGC TGTCGGGCGTTGACCTGGCCATGAAGCTCCACTACATAAAGGCCGTATACTTCTTCAGCAAGGAGGCCGCAAGTGATTTTACCATTTTGGACCTCAAGGA GCCCATGTTCCCCTGGCTAGCCCACTACTACCCTGCTTCCGGCAGGATACGCCGCCCTGACGCCCAAGACGACGTCCGCGGGAGCCGGCCCTTCATCAAC CGCAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGGCTGCCGACCCAAGAGG AGGAGGAGGAGGAGGAGGAAGATGGATTGCTGACGTCGTTTGATCATGTTCTTGGCCCTGATTTGGGATTTTCTCCGCTCGTTTATCTTCAGTTCACTTG GTTCAAGTGTGGCGGTCTTTCGGTGGGCCTAAGTTGGGCTCACGTGCTTGGCGATCCATTCACGGCCTCCACATTCATCAACACGTGGGCCCAACTACTC AAAGGCCACAAAATTATTCCGGACGGGTTAGATCCTTACCGGCCCATCTCCTTTCCAATTCAACGTCCCACTAATAAGATTAAGATCCCTTCCTTTGTAA AACGGGTCGACCCGGTAGGCGATTATTGGCGCGCTCCTCCTTGTTACATAAAGATTCAAACTCACACATTTTATCTGACCTCGGGGCAACGAAGTAAAGT CAAATCCAGAGTCGCCTCCTCCAAAATATCAAGTTTCGATATACTGTCAGCGATCATATGGAAATCGTTAGCGAAACTCAGAAAAGTAAGTATTGTGACG ATCTGCCGGAACAAATTCCCCGCGGCTTGTCCACGGCTGGGAAACAAGATGGCGATGGGGGCGATTCATGCCGATTTCGGTACCGTAGAAAAGAGCGAGG TGCGTGAGTTGGCGGAGTTGATTGCAGCAAGGAGAAAAGAAGACGAAAGCGAGTTGATTGAGGAGAATGTCGATTTCGACTGTGTGGTGTACGGAGGGAA CTTGACGTTTGTGAACATGGAAGAGGCTGAAATTTATGGGGTGGAAATGAAGGGGCGGAAGCCGATACATGCCGAGTACAGAATCGAGGGAGTGGGGGAA GAAGGGTGTGTGTTGGTGATGAAAGACAAAGAATGTGGAACGGCGGTGACCGTTATGTTACCGGGAAAAGAAGTGGCGGAGCTGAAAGAGGAGATGAGGA AGAGCTGGGGTATTGTGTGA
AA sequence Show only first row Show all	>Lus10042870 pacid=23181860 polypeptide=Lus10042870 locus=Lus10042870.g ID=Lus10042870.BGIv1.0 annot-version=v1.0 MVSSTTPAPSVSAARLSTVVPASVTGENKKEWRLSGVDLAMKLHYIKAVYFFSKEAASDFTILDLKEPMFPWLAHYYPASGRIRRPDAQDDVRGSRPFIN RNXXXXXXXXXXXXXXXXXXXXXXXXRRLPTQEEEEEEEEDGLLTSFDHVLGPDLGFSPLVYLQFTWFKCGGLSVGLSWAHVLGDPFTASTFINTWAQLL KGHKIIPDGLDPYRPISFPIQRPTNKIKIPSFVKRVDPVGDYWRAPPCYIKIQTHTFYLTSGQRSKVKSRVASSKISSFDILSAIIWKSLAKLRKVSIVT ICRNKFPAACPRLGNKMAMGAIHADFGTVEKSEVRELAELIAARRKEDESELIEENVDFDCVVYGGNLTFVNMEEAEIYGVEMKGRKPIHAEYRIEGVGE EGCVLVMKDKECGTAVTVMLPGKEVAELKEEMRKSWGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10042870 [exp]	0	1
AT3G27210			unknown protein		Lus10035217 [exp]	17.1	0.7958
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011287 [exp]	18.5	0.7203
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	18.7	0.7801
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	22.9	0.8065
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	23.5	0.7974
AT4G14380			unknown protein		Lus10011818 [exp]	23.7	0.7727
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	31.4	0.7921
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	37.7	0.7167
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	40.6	0.7070
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	41.4	0.7670

Compare expression of checked genes

Lus10042870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.