Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58220 165 / 2e-43 MYB Homeodomain-like superfamily protein (.1) AT1G09710 160 / 1e-42 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028172 [exp] 824 / 0 AT1G58220 216 / 2e-61 Homeodomain-like superfamily protein (.1) Lus10027189 [exp] 45 / 0.0002 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 44 / 0.0004 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106500 [exp] 276 / 4e-85 AT1G09710 228 / 1e-65 Homeodomain-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042871 pacid=23181973 polypeptide=Lus10042871 locus=Lus10042871.g ID=Lus10042871.BGIv1.0 annot-version=v1.0 ATGGTCGTCGATAAAACGAAGAGCGGCAAGCAGAAAAGGGGGCGGATCAGTGACGAGGATATCTTCTGCGTCTTGCAAAGGTATACGGCTACGACAGTTT TGGCATTGTTGCACGAAGTAGGTCAATTTGAAGGAGCAAAGATTGATTGGAATGCCATTGTGAAGAAGACTTCAACTGGGATTACTAGTGCCAGGGAGTA CCAAATGCTATGGAGGCATTTGGCTTATCGAGATTCCTTGTCAGATAAACTGAATGATAACGATCAGTTGCTGGACGATGACAGTGACTTGGAGTATGAA TTGGAAGCATGCCCAGAAGTTAGTGGTGAGGTTTCGGCTGAGGCAGCAGCAAGTGTGAAGGTGTTGATGGCTTGTGCTTTACCAAATGACACCAATAAAC ACACAGGAGAAACTTTTGAGTCTTCATTGATCCGTTCAACGACAGAAAATTTGCAGCCTTATGCAGTTCAGAAGCAACAGTTGACTATAGTAACTGATTC AGAAGGCAAAGATGGTAATCTTCAATCCAAAAAGAAGAGAAAAACATGGTCCGATGCGAAGGATCTAGAATTGATTGCTGCAGTACGGAAGTTTGGCGAG GGGAATTGGACCAGTATAGTAAAAAGCGGCATCATGGGAGATAGTACTACTTCACAACTATCTCAGAGATGGGCCAACATTCGAAAGAAGAACAACTTAA ATTTTGGAACAAATCCAAGAAACTCGCAACTATCCGAGGCGCAACAGGCAGCTCGTCATGCAGTGAATATGGCTCTTGATCCCCCGACTAGGAACACATT TATAAATCGCACAGGTATACCTTCTCAACAGGAGCCTCAAAAGCGTCAAGCTATCACAAGGTTCTCGATAATGGGAACTATGGGTACAGCAAGTAAGGGA GCGAATTTGGCTTCAGATCCTTTAAGAGCTGCTGCAGTTTTTGCCGGGGCTCGTATTGTAAGCCAGTCAGACGCTGCTTCACTCCTCAAGACGTCTCAGG GAAATAATGTCGTCCACCACATTATGCCAAAAGGCAGTCCCTCGATAAGAACACCGATGTTTTCTGGTGCATCATCCACTCATCTATCTAATGGAGTAGA AGCAGCAGCAGCTAGTGCCCCGCTTTCCCCTCCATCAATGGTGCAGCGTCCTCGTCCTGCATTAAGCCAGCCGAAAAAGATGTCACCTGTTCAACACGGT TGTTCGGAACCACTGAAGAAAGAACGAGATGCTAAAACTGTAGATGGTTGCCGCATTGAGCAAGTTGTGAATGATAAAACAGCACAGGGTGTGAAATCCT CGGAAGGTAATAATGGTAAGATTCTAGTCGCTCAAAACTCCAGTCCGCTTCCGGAAAAGGACTCCGTTGAGAATAGCAAGGTGGGTCCGCTAAATACAAA ACCTGAAGGGACTCTGAAAGAGAATGATAACAATGGTGACTGTAAAGAGGAGGACGAAAACAGAGTAATCAAGCAGCAAAGTGATAATGGCGTTGGCAGT GAAAAGGTGGTGAAGGTGAATAGAGGAGAGGAGGCTGATAATAATTAA
AA sequence Show only first row Show all	>Lus10042871 pacid=23181973 polypeptide=Lus10042871 locus=Lus10042871.g ID=Lus10042871.BGIv1.0 annot-version=v1.0 MVVDKTKSGKQKRGRISDEDIFCVLQRYTATTVLALLHEVGQFEGAKIDWNAIVKKTSTGITSAREYQMLWRHLAYRDSLSDKLNDNDQLLDDDSDLEYE LEACPEVSGEVSAEAAASVKVLMACALPNDTNKHTGETFESSLIRSTTENLQPYAVQKQQLTIVTDSEGKDGNLQSKKKRKTWSDAKDLELIAAVRKFGE GNWTSIVKSGIMGDSTTSQLSQRWANIRKKNNLNFGTNPRNSQLSEAQQAARHAVNMALDPPTRNTFINRTGIPSQQEPQKRQAITRFSIMGTMGTASKG ANLASDPLRAAAVFAGARIVSQSDAASLLKTSQGNNVVHHIMPKGSPSIRTPMFSGASSTHLSNGVEAAAASAPLSPPSMVQRPRPALSQPKKMSPVQHG CSEPLKKERDAKTVDGCRIEQVVNDKTAQGVKSSEGNNGKILVAQNSSPLPEKDSVENSKVGPLNTKPEGTLKENDNNGDCKEEDENRVIKQQSDNGVGS EKVVKVNRGEEADNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10042871 [exp]	0	1
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	2.8	0.7691
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	5.5	0.8137
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10014249 [exp]	8.8	0.7329
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	17.8	0.8024
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	23.9	0.7376
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	27.9	0.7873
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	29.2	0.7553
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	31.6	0.7487
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	38.1	0.7689
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	38.5	0.7089

Compare expression of checked genes

Lus10042871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.