Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02040 118 / 1e-29 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 109 / 5e-27 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 94 / 2e-21 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT2G45120 89 / 2e-19 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 87 / 4e-19 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G60580 86 / 2e-18 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 77 / 1e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G27730 76 / 2e-15 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT3G49930 74 / 5e-15 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G67450 74 / 7e-15 C2H2ZnF AZF1 zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028173 [exp] 627 / 0 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10009775 [exp] 308 / 9e-100 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 308 / 1e-99 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 92 / 5e-20 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 89 / 6e-19 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 86 / 2e-18 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021637 [exp] 85 / 2e-17 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10014631 [exp] 82 / 3e-17 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10033798 [exp] 81 / 6e-17 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066200 [exp] 322 / 5e-106 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 320 / 4e-105 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 108 / 3e-26 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 103 / 2e-24 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.002G119300 [exp] 99 / 2e-23 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.014G017300 [exp] 89 / 7e-20 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.001G295500 [exp] 88 / 1e-19 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.006G121600 [exp] 82 / 2e-17 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 80 / 2e-16 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.002G143800 [exp] 80 / 3e-16 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042872 pacid=23181762 polypeptide=Lus10042872 locus=Lus10042872.g ID=Lus10042872.BGIv1.0 annot-version=v1.0 ATGGATATGGCACTGATTATTGTGGATCAAGAATTGGAGTTGAAGCAGTACTTTTGTAAGATTTGCAAGAAAGGATTCAGGTGCGGGAGAGCACTAGGCG GGCATATGAGAGCTCATGGAATAGGTTATGATGATCATAGTTTCGATTATGATCACATGGAGGCCGAAGAGGAGGAGGAGGAGGATGATCATTCGAGCGA TTGGGAAGACAACGACGTCGTCGTTGCTCCTACAAACAACAATGATAAGAAATTGTACGGATTGCGCACGAACCCTAATCGGCTAAAAACCACCCGAATA TGCGAGAATTGCGACAAGGAGTTTCTGTCGTGGAAATCATTCCTCGAGCACAAAGCTGCAAACAAATGCACCTCTGATGATGCAGATTCAGTCGTCTCCA GTGCCGATCATCAAGACTACTCCAGCCTTAACACTGGTTGGTCTAAAAGGAAGAGGTCCATGAGAGCCAAAGTTATATCGACCGAGGAAGAAGATTTGGC CAACTGCCTCATGTTGCTATCCAATGCCGGAAACACGATGATTGTCGATGATGATGATCAGCCCGAGGAATCATGTGCTTCCGCGAGTAAGGACGATCAC GAAGATCGTAAATTAAGGCCGACGACGAAGACGATTCAAATGATCATCCCTCCTTCACCTAAGACGGCGAAATTAGAATTAGGTAACAACATTAATAACA CTTATAACAAAGGGGCGTTCGAGTGCAAAGCTTGTAAGAAAGTGTTCAACTCTCACCAGGCGCTGGGCGGACACAGAGCCAGTCACAAGAAAGTGAAAGG TTGTTTCGCTGCTGCTGCCGCGGCCGACGAAGACGTCATGATCACGTTACAGCATGACGACACATTCTTCCTCCCCAAGTTTCATCCAGCTGGCTCGGTC AACAACAAGAGGAAAATGTCGAGCAAAGTGCACGAGTGCTCGATTTGCCACCGGGTATTTTCTTCGGGTCAAGCACTTGGTGGCCACAAGCGATGCCACT GGATCACCTCTAACAATAACAATAATTCTTCTTCTTCCACGGCAGCAAAACTGATCCATCTTGAGAAAAGTCAACAAATTATTAATAGACGGAATAAAAA TACTACCTCCGTTGATCTCTCGCTGGAACTCAACCTCCATGCTTCTCCTCCCACCAACAACGATGACCATTTGAAGAAGAAGAAGAAGAATGAAAACGAC AGCGCTTGGTCGATGGTGGACGACGAGGCGGAAAGTAAGGTGAAGTTAGCGAAGCTTAGTGAGCTCAAGGACATCAATGTAAATAATGGGAATTCCTCCC CATGGCTGCAAGTAGGAATTGGCGCCTCTGCTGCTCTGAAGTGA
AA sequence Show only first row Show all	>Lus10042872 pacid=23181762 polypeptide=Lus10042872 locus=Lus10042872.g ID=Lus10042872.BGIv1.0 annot-version=v1.0 MDMALIIVDQELELKQYFCKICKKGFRCGRALGGHMRAHGIGYDDHSFDYDHMEAEEEEEEDDHSSDWEDNDVVVAPTNNNDKKLYGLRTNPNRLKTTRI CENCDKEFLSWKSFLEHKAANKCTSDDADSVVSSADHQDYSSLNTGWSKRKRSMRAKVISTEEEDLANCLMLLSNAGNTMIVDDDDQPEESCASASKDDH EDRKLRPTTKTIQMIIPPSPKTAKLELGNNINNTYNKGAFECKACKKVFNSHQALGGHRASHKKVKGCFAAAAAADEDVMITLQHDDTFFLPKFHPAGSV NNKRKMSSKVHECSICHRVFSSGQALGGHKRCHWITSNNNNNSSSSTAAKLIHLEKSQQIINRRNKNTTSVDLSLELNLHASPPTNNDDHLKKKKKNEND SAWSMVDDEAESKVKLAKLSELKDINVNNGNSSPWLQVGIGASAALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	0	1
AT5G02700			F-box/RNI-like superfamily pro...		Lus10037151 [exp]	5.9	0.5884
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	7.1	0.6433
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10003652 [exp]	11.7	0.6428
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	12.1	0.6445
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	14.3	0.6022
					Lus10028673 [exp]	19.0	0.6017
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	19.8	0.5866
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	26.7	0.5653
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	27.9	0.5758
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	27.9	0.5906

Compare expression of checked genes

Lus10042872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.