Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60550 299 / 1e-103 CYCP3;2 cyclin p3;2 (.1) AT2G45080 292 / 6e-101 CYCP3;1 cyclin p3;1 (.1) AT2G44740 145 / 1e-43 CYCP4;1 cyclin p4;1 (.1) AT5G07450 144 / 5e-43 CYCP4;3 cyclin p4;3 (.1) AT3G21870 143 / 1e-42 CYCP2;1 cyclin p2;1 (.1) AT5G61650 142 / 5e-42 CYCP4;2 CYCLIN P4;2 (.1) AT3G63120 128 / 1e-36 CYCP1;1 cyclin p1;1 (.1) AT3G05327 115 / 6e-32 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028174 [exp] 375 / 2e-134 AT2G45080 249 / 1e-84 cyclin p3;1 (.1) Lus10022038 [exp] 163 / 3e-50 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10042582 [exp] 155 / 3e-47 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10027148 [exp] 150 / 1e-44 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10039697 [exp] 146 / 1e-43 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10032505 [exp] 139 / 9e-41 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10004475 [exp] 139 / 1e-40 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10043003 [exp] 139 / 1e-40 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10029933 [exp] 135 / 2e-39 AT3G05327 172 / 3e-54 Cyclin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143400 [exp] 319 / 1e-111 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 310 / 4e-108 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.007G121500 [exp] 164 / 1e-50 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 152 / 2e-46 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.015G112140 [exp] 152 / 3e-46 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.012G114600 [exp] 149 / 1e-44 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.005G209800 [exp] 146 / 1e-43 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.002G052800 [exp] 145 / 4e-43 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.013G023000 [exp] 144 / 4e-43 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 137 / 2e-40 AT3G05327 184 / 5e-59 Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10042873 pacid=23181653 polypeptide=Lus10042873 locus=Lus10042873.g ID=Lus10042873.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAAATTCCCTCGCAATCTCTCCGGAAAAGCTCCGATCAGATCTTAACTCCTCTTCATCCGCCGCCGACACCCCGCTGGTAATATCCGTCC TGGCTTCTCTACTCGACCGAACCATGGCTCGTAACCAGAGAATCCTAGAAAGGAACTCTTCGGTAGCCGCCGCCCGCCCGAGTAGAACCGGCCAGGTGTT CGATTCCTCCATAGTACCGGACTTGACAATCCAATCCTACCTGGAGCGGATCTACCGCTACACCCGGGCCGGACCCTCCGTCTACGTGGTTGCCTATGTC TACATCGACAGATTCTGCCAAGCCAATCCTGGATTCATCATCACCTCCCGAAATGTTCATCGCCTCCTCATTACCACCATCGTCCTCGCCTCCAAATACG TTGAGGACATGAATTACAAGAACTCGTATTTGGCGAGGGTGGGAGGGATAACTACTGGGGAACTGAACAAGATGGAGGTGGATTTCCTGTTCATGATGGG ATTCAAGATGCATGTGAATCTGAGCGTGTTCGAGAGCTATTGCTGCCATTTGGAGAGGGAAGTAAGCGTCGGCGGCGGGTATCAAATTGAGAGAACTCTG CGCTACTGTGCTCAAGATATCAAGTCGGGACAAATTCTTCGTCGTGACAGATTTAGTTTCCAGATTTCTCCCCGGATTATGTTATAG
AA sequence Show only first row Show all	>Lus10042873 pacid=23181653 polypeptide=Lus10042873 locus=Lus10042873.g ID=Lus10042873.BGIv1.0 annot-version=v1.0 MASSNSLAISPEKLRSDLNSSSSAADTPLVISVLASLLDRTMARNQRILERNSSVAAARPSRTGQVFDSSIVPDLTIQSYLERIYRYTRAGPSVYVVAYV YIDRFCQANPGFIITSRNVHRLLITTIVLASKYVEDMNYKNSYLARVGGITTGELNKMEVDFLFMMGFKMHVNLSVFESYCCHLEREVSVGGGYQIERTL RYCAQDIKSGQILRRDRFSFQISPRIML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Lus10042873 [exp]	0	1
AT5G25050			Major facilitator superfamily ...		Lus10003419 [exp]	8.1	0.8072
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	11.7	0.8198
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	11.9	0.8266
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	12.2	0.8194
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	20.7	0.8116
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	26.2	0.8056
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	27.6	0.7697
					Lus10036593 [exp]	29.1	0.7964
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	34.9	0.7960
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	36.7	0.7893

Compare expression of checked genes

Lus10042873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.