Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 48 / 7e-07 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028175 [exp] 112 / 1e-29 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 39 / 0.0006 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 39 / 0.0007 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000208 [exp] 38 / 0.001 AT4G00050 50 / 2e-07 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143300 [exp] 66 / 4e-13 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 65 / 8e-13 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042874 pacid=23181703 polypeptide=Lus10042874 locus=Lus10042874.g ID=Lus10042874.BGIv1.0 annot-version=v1.0 ATGCTGGATGAAGTGATTGAGTATTTGAAGCAACTACAAGCGCAAGTCCAGATGATGAACAGGATGAACATGCAGCCAGCAGCAATGATGCTACCAATGG CGGCGATGCAACAGCAGCTCCAAATGTCAATGATGACCCCGATGAACATCGGTATGGGGATGGGTATGGGGATGGGTATGTTGGACATGAGTTCCATGGC TCGTCCCGCCCAGCTACTACTCCATCCAACGAATCCCTTCATGCCCTCCTGGGATGGAGGACTCTCTGCCGCCACCGATCGCTTGCCTTCTGCAATCACC ACCGACCCCTTGTCCGCTTTTTTGGCTTCTCAGTCCCAGCAGCAGCAGCAGCAGCAGCCGGCCATGAACATGAACATGGATGCATACAGTAGAATGGCTG CATTGTACCAACAGCTTCATCAGAAGCCACCTGGAACTGGTTCCAAGAACTAG
AA sequence Show only first row Show all	>Lus10042874 pacid=23181703 polypeptide=Lus10042874 locus=Lus10042874.g ID=Lus10042874.BGIv1.0 annot-version=v1.0 MLDEVIEYLKQLQAQVQMMNRMNMQPAAMMLPMAAMQQQLQMSMMTPMNIGMGMGMGMGMLDMSSMARPAQLLLHPTNPFMPSWDGGLSAATDRLPSAIT TDPLSAFLASQSQQQQQQQPAMNMNMDAYSRMAALYQQLHQKPPGTGSKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	0	1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	1.4	0.8560
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	1.4	0.8874
AT3G50910			unknown protein		Lus10041772 [exp]	3.7	0.8167
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	5.1	0.7991
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10036637 [exp]	5.5	0.7875
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	7.5	0.8141
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	8.1	0.7997
AT2G04790			unknown protein		Lus10012354 [exp]	8.1	0.8480
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	8.5	0.8133
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	9.2	0.7996

Compare expression of checked genes

Lus10042874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.