Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 105 / 9e-27 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G61270 49 / 9e-07 bHLH PIF7, bHLH072 phytochrome-interacting factor7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028175 [exp] 72 / 1e-14 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 45 / 1e-05 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066500 [exp] 123 / 4e-33 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G143300 [exp] 115 / 5e-30 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042875 pacid=23182016 polypeptide=Lus10042875 locus=Lus10042875.g ID=Lus10042875.BGIv1.0 annot-version=v1.0 ATGAGCCAGTGTGTACCCAGTTGGGAGGTTGAGGAGGAGAATCCAACTCCTTCCAGGCTCACTCTCCGCTCCAACTCCAACTCCACCGTTCCCGCCGTTT CCATATTGGATTATGAGGTGGCGGAGCTTACTTGGGAGAATGGACAGTTAGCCATGCACGGCCTAGGTTTGCCCCGACCCGCTATGCCCGCCAAGTTGGC CCCAACAACAACTACTCACGCTCCACGTGCCTGTGGTACACTCGAGTCTATTGTAAATCAAGCCAGTCACCTTGCCGGCGGGAAAGGGATGACAACGGCG GCTCAGCCGTTCGGTGTGGAAGCTGAAGAGCTCGTCACATGGTTGGACCACAACCACCGTGTGGCCATGGACGCTCTCGTCCCGTGCTCCAACGTCGTCC CTACTACTACTAATGTTCCTCAAGATCATCGGATCAAGGCTCAACGGGTTATGGAGTTGGCGCCGGTAGCGGGTATGAGTGTCCATCCACAGGGCAGGTC GGTGAGTTGGAGGGCGGGAGGCGTGGGGGAGGGAAAGTGGCGGCGCGTCCGGAGTGGAGTGGGAGGGACCAGAGCGCGTGTGGGAGCGCCAGTTTGGGGA GGGAGAGCCAGCGCGTGA
AA sequence Show only first row Show all	>Lus10042875 pacid=23182016 polypeptide=Lus10042875 locus=Lus10042875.g ID=Lus10042875.BGIv1.0 annot-version=v1.0 MSQCVPSWEVEEENPTPSRLTLRSNSNSTVPAVSILDYEVAELTWENGQLAMHGLGLPRPAMPAKLAPTTTTHAPRACGTLESIVNQASHLAGGKGMTTA AQPFGVEAEELVTWLDHNHRVAMDALVPCSNVVPTTTNVPQDHRIKAQRVMELAPVAGMSVHPQGRSVSWRAGGVGEGKWRRVRSGVGGTRARVGAPVWG GRASA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	1.0	0.9555
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10010914 [exp]	5.4	0.8257
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	6.5	0.9032
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	7.7	0.8780
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	9.5	0.8739
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	9.6	0.8799
AT4G10160			RING/U-box superfamily protein...		Lus10016924 [exp]	12.6	0.8506
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	16.2	0.8464
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	18.4	0.8477
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	18.5	0.8505

Compare expression of checked genes

Lus10042875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.