Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02080 1125 / 0 transcription regulators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028176 [exp] 1810 / 0 AT1G02080 2621 / 0.0 transcription regulators (.1.2) Lus10024660 [exp] 1623 / 0 AT1G02080 2743 / 0.0 transcription regulators (.1.2) Lus10024551 [exp] 67 / 4e-13 ND / Lus10033213 [exp] 65 / 4e-10 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10039384 [exp] 52 / 1e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143000 [exp] 1338 / 0 AT1G02080 1868 / 0.0 transcription regulators (.1.2) Potri.014G058800 [exp] 960 / 0 AT1G02080 1830 / 0.0 transcription regulators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04054 [flax] [poplar] Not1 CCR4-Not complex component, Not1
Representative CDS sequence Show only first row Show all	>Lus10042876 pacid=23181887 polypeptide=Lus10042876 locus=Lus10042876.g ID=Lus10042876.BGIv1.0 annot-version=v1.0 ATGAATCCCGGGGAGCTACCTGTTGAGCCTCTTAATTCTGGGGGTCGTGCACCCGTGCCCTCTCAGTATGTTCCTCCTGTCCAGGGTTCTTCTGGCACAA AGATGGAGGATGAAAAACTACCTGGTTTGAGTTTGTCTGACCAGCTTCCTTCTGGACAATCACTATTCCAGCCTACTACTACACAATCTCCTTTTCCTGC TAGTCAGTTCCCTGCAGTCTCAATGGCCAATATTGCTCCCCATGTTGTCATTAACCAGAAGCTTCAGGGTTGGGGTCTGAATTTTCAAAGGATGGTACCT ATTGTAATTGAAAGAGCTGTCAAGGAAATCGTATCAGGTATTGTTCAGCGCAGTGTTTCTATAGCTACCCAGACAACAAAGGAGCTTGTTTTAAAGGATT ATGCCATGGAAACTGACGAGACTCGCATATGCAATGCGGCACACCTTATGGTTGCTAGCTTGGCTGGAAGCTTAGCTCACGTCACCTGCAAGGAACCTCT ACGTAGTTCAATATCAAGCCATATGAGGAATTCCCTTCAAACCACCCCCTATGGGTTGAATACCACAAGTGAGCTTCTTGAACATGCTGTGCAGCTTGCC ACCAATGATAACCTTGATTTGGGGTGTGCACTGATTGAACAAGCTGCAACAGACAAGGCGATACTAACTATTAGCGATGAAATAGCCCACCAATTATCAT TGAGAAGGAAACATAGAGACAGTGTTGGCCAAACATTATTCGAGACAAACATGTATTCCATGGGTGTGGTACCTGAGGCTCTCCGCCCTAAGCCTGGGCA TTTGTCCTTGTCTCAGCAGCGAGTTTATGAGGACTTTGTTCGGCTTCCATGGCAAAGTCAGTCTTCCCAGGGCTCGCAGTCTATTGCTACTGGCAGTGGT CTTGCTGGTGGACATGGCTTGGTGTCTGGACAGCCCATCTCAGGGTATTCTTCTGGTCTAGTGGGTTTGGGAGTCGAGGCAACTCAAACGTTGGATCTGG GTTCTGAGGCAATTGATTCAAATTCAGCAGCACTTCCAAGTTCTTCCTCGATAAATATTGGAGCAGATGCTACTGTACCGGCTACTGAATCTCAGCTGGT AGATCCTTTCGACAATGTGAACGTTGGACAAATACCAGTTTCTGAATCTGGATCTTCCTCTCAACCAATGCCATCATCAATTGCTTCTGAACGAGTTGGG ACTAGTGTATCTGAACCTTCACTAAGCACAAGGGACGCACTGGATAAGTACCAAGTCATTGCTCAAAAGATGGAAGCTTTGGTCACAAGTGATGGTAGAG AAGCAGAGTTACAGGGAGTGATTACTGAGGTACCCGAGATCATACTTTGCTGTATCAGTCGTGATGAGGCTGCCCTAGCTGTTGCTCAAAAGGTTTTCAA GGGGTTATATGAGAATGCTTTTAACATCTCTCATGTTAGTGCCTCTCTTGCAATTTTGGCTGCAATACGAGATGTTTGCAAGCTTGTTGTTAAAGAACTT ACTAGCTGGGTCATTTACTCAGACGAGGAGCGAAAATTCAATAAAGATGTCACTATGGCTCTTATACGCAGTGAATTTCTCAATCTTGCAGAGTACAATG TTCATATGGCAAAACTTATCGATGGTGGAAGGAATAAAGCTGCAACCGAGTTTTCTGTTTCACTTATCCAAGCTTTGGTTGTTGAAGATTACAATATCAT CTCTGAACTTCATAATCTTGTGGATGCATTGGCAAAGCTTGCTTCAAAACCTGGATCTCCCGAGTCACTGCAACAACTGATGGAGATTGTGAAGAACCCT ACTGCTAATGTTGCTGCTATATCAGCTTTTGCTGTTGGAAAAGATGATAAAACAAGACAGAAAAAGGTTACGAATCCGTCCTCGGTCAACCGTGAAGACT TCAGCACCGTGGAGTCCGTAGAACCTGACCCTGCAGGATTCAGGGATCAGGTTACTGTTCAATTCCGTGAATGGTACCGGATATGTGAACTACCTGGCTC AAATGATTCTACATATACCCATTACCTCTTGCAACTGCGCCAGAATGGGTTTCTCAAGGGTGATGACTTGACTGACCGATTTTTCCGCGTTCTGATGGAA CTTTCTGTTGACCACTGTCTCTCTTCTGAGGGGTTGAATTCAGCTGGAATGCAAGGGCAGAGTATGTCATTTCTTGCCATTGATATATTTGCAAAACTCC TCTTTGCGATTCTAAAGGTTGAGCAGGGACCTACTAAACAGTTCCTTCTGTCAAAGATGCTGGCTGTTACCGTAAAATATATACAAAAAGACTCGGAGGA CAAGAAACTTGCTTTTAATCCAAGGCCGTATTTCAGATTGTTTATAAACTTGATGCTTGACCTTGTTTCATTGGACTCTGGAAATGAGGGGGTGATTTTT CAGGTATACCCCTTGCTTGTTCTCGTCGTTGTCCTTTCTGCTACTAGGTTTCCATGCACTATTCTGACTTCATTTGCTCAGGCGTTCCATCTTTTGCAAC CTCTTAAAGTTCCTGCGTTCAGCTATGCGTGGCTCGAGTTAGTAAGTCACAGGAGCTTCATGCCAAAATTACTTACTGGAAATGTGCAAAAGGGCTGGCC ATATGTTCAACGACTGCTAGTAGATCTGTTTCAGTTCCTTGAGCCGTTTCTAAGAAATTCTGATCTGCGAGGACCGATTGATTTGCTTCCTGAAATTAGA GAACCACCTCACATCTTGTCAGAAGTTGATACAGCTCTGAGATTGAAAAACATGAAAGCTGACGTGGATGAATATCTCAAGACGAGGCAACAAGGTTCTT CATTCCTCACTGACCTGAAACAGAGGCTGATTCTTATGCCAAGCGAGGCTTCAACGGCCGGGACACGTTACAATGTTTCACTGATTAATTCTCTCGTCCT TTACACTGGGATGCAGGCAATCCAACAGTTGCAGGCAAGAACTCCTCAAGCTTTGTTGGTGGACGCTGAATTAGATATTTACCAGACCCTAGTAGTTGAG CTAGACAACGAAGGTCGATACCTCGTCCTCAATGCTGTTGCTAACCAACTGCGCTATCCGAACAACCACACACATTACTTCTCTTTTGTCCTGCTCTACT TATTTGCAGAGTCAAACCAGGAAATAATCCAAGAGCAGATTACCAGAGTGCTGTTGGAACGTCTGATTGTTAATAGACCGCACCCATGGGGGCTTTTGAT CACTTTCATTGAGCTAATCAAGTATGGCGACAGATCCAATAGTGTTCTCGTTCTCCAACTGCCGCTGTTGCGGTGGCGGGAGATCGTGCGGCAACGAGCC TTCTGGCAAGATTCTTTTTCCCAGAGCCCAAGTCGGTACGGTGTGCAGCCTGAGGTGGTGGTCATTGATGTTGGCTACGACATGCATCAATTGTTCTTCA ACTCCAAGGGAGCGATGGCCCGGGTTCTCAAATGGCGCCCCCAGTCACTGGAGGGTTTCTTTGTCAGCGTCTGCCAATGGAAGCCGCTGTCTCCGGATAG GTTTCGCTTGCTGTGA
AA sequence Show only first row Show all	>Lus10042876 pacid=23181887 polypeptide=Lus10042876 locus=Lus10042876.g ID=Lus10042876.BGIv1.0 annot-version=v1.0 MNPGELPVEPLNSGGRAPVPSQYVPPVQGSSGTKMEDEKLPGLSLSDQLPSGQSLFQPTTTQSPFPASQFPAVSMANIAPHVVINQKLQGWGLNFQRMVP IVIERAVKEIVSGIVQRSVSIATQTTKELVLKDYAMETDETRICNAAHLMVASLAGSLAHVTCKEPLRSSISSHMRNSLQTTPYGLNTTSELLEHAVQLA TNDNLDLGCALIEQAATDKAILTISDEIAHQLSLRRKHRDSVGQTLFETNMYSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQSQSSQGSQSIATGSG LAGGHGLVSGQPISGYSSGLVGLGVEATQTLDLGSEAIDSNSAALPSSSSINIGADATVPATESQLVDPFDNVNVGQIPVSESGSSSQPMPSSIASERVG TSVSEPSLSTRDALDKYQVIAQKMEALVTSDGREAELQGVITEVPEIILCCISRDEAALAVAQKVFKGLYENAFNISHVSASLAILAAIRDVCKLVVKEL TSWVIYSDEERKFNKDVTMALIRSEFLNLAEYNVHMAKLIDGGRNKAATEFSVSLIQALVVEDYNIISELHNLVDALAKLASKPGSPESLQQLMEIVKNP TANVAAISAFAVGKDDKTRQKKVTNPSSVNREDFSTVESVEPDPAGFRDQVTVQFREWYRICELPGSNDSTYTHYLLQLRQNGFLKGDDLTDRFFRVLME LSVDHCLSSEGLNSAGMQGQSMSFLAIDIFAKLLFAILKVEQGPTKQFLLSKMLAVTVKYIQKDSEDKKLAFNPRPYFRLFINLMLDLVSLDSGNEGVIF QVYPLLVLVVVLSATRFPCTILTSFAQAFHLLQPLKVPAFSYAWLELVSHRSFMPKLLTGNVQKGWPYVQRLLVDLFQFLEPFLRNSDLRGPIDLLPEIR EPPHILSEVDTALRLKNMKADVDEYLKTRQQGSSFLTDLKQRLILMPSEASTAGTRYNVSLINSLVLYTGMQAIQQLQARTPQALLVDAELDIYQTLVVE LDNEGRYLVLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKYGDRSNSVLVLQLPLLRWREIVRQRA FWQDSFSQSPSRYGVQPEVVVIDVGYDMHQLFFNSKGAMARVLKWRPQSLEGFFVSVCQWKPLSPDRFRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	0	1
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	1.0	0.9757
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10012798 [exp]	4.2	0.9479
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	6.2	0.9388
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	7.1	0.9100
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	8.7	0.9197
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	9.2	0.9213
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	9.4	0.9259
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	9.5	0.9221
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	10.0	0.9375
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	11.6	0.9291

Compare expression of checked genes

Lus10042876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.