Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02080 887 / 0 transcription regulators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028176 [exp] 1652 / 0 AT1G02080 2621 / 0.0 transcription regulators (.1.2) Lus10024660 [exp] 1570 / 0 AT1G02080 2743 / 0.0 transcription regulators (.1.2) Lus10032287 [exp] 290 / 1e-83 AT5G41370 1202 / 0.0 ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, homolog of xeroderma pigmentosum complementation group B 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143000 [exp] 1409 / 0 AT1G02080 1868 / 0.0 transcription regulators (.1.2) Potri.014G058800 [exp] 1363 / 0 AT1G02080 1830 / 0.0 transcription regulators (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042877 pacid=23181774 polypeptide=Lus10042877 locus=Lus10042877.g ID=Lus10042877.BGIv1.0 annot-version=v1.0 ATGTCTAAGTTGTCTATGATGGTTCCTAACCAGATTCGGTTCTTGCTTCAGAGCTTGAACGGAGCCAACGCCGACTCTGTTTTCCGGGAGCTTTGTCAGT TCAGTGATTATGGTGTTGAAGGGAGCATCCTGCTGCTTCAGATCTGCTTTGAACACCTTAACATCTACCGAACAGATCTGCAGAATGTCCATCTTGAACA AGTTCTCGAGTCCATTTTCAAGTTTCTGATGACTAAACCAAATTTCTCAACTGTGTTCTGTCAGTCTCTGGGTAGTGTAGTAATAAGTGAGCATGTGCTG GAGAGTTTGTCTAGTAGTTTGCACTTAACGGTACAGGAAAAGATTGGAGTGGGCCTCGCTTTGTCTGATTCTGATGGTCTTGACACTAGGATGTATGCAA AAAATTTCTGCATGTCTCTCCTTGAGGAATTGTGCGCCAATCCTGTTTCTATAACCTCTACTGAGCAGATTCAGAATATTGTTATGTTCCTCCAGCGATC GGAGGACTTCTCCAAGCATGTCGATCAATTTATGCAGATGTTATCACTGACTCGATCAAACGATGTTATACCATTTGTGTTAACTCCACTGCTTTCAGAA GAATTACGCGAGAAAAACTTTTTAAGAACCATTGATTGTTTTTATGCAAGCGAAGAAAGTGAATTTGATGCAATATTAGCTGACATGGAGAAGGAGATGA GTGTGGGAGATATTGTGGAGGAATTAGGATATGGATGCACATTGGATGCCTCACATTGCACAGAGATATTAGCTCTTTTCCCGCCACTTACTGAGATTAC CATCTCTAGGATTCTTGGTGCAATTGTACGCAGCCAGACTGGTCTGGAGGATAACCAGAGTACATTTTCGACCTTCAGTACTGCTCTTGGTTACGGTTTT TCCAATGATCTACCAACTGTTAGCTCTTGGGATGTTGAGGTCCTTGTAAGAACAGTCATGCAACTTGATCCATTCCCTCTTCATGCTATCTGCAGGGTTC CTTGGAAGAACACTGAGGGACAGCTATCTATTCTTAGATATGCAGTGTTGGCACCCCCTGAAGTGTTAACCTTTGCTCACTCTGGGAGACAGCTGGCTTA CATGGATGCAGATAATGGACACAAGCTTCAAGCTGGATGTGCAAATCAAGCATGGTTGTGTATTGACCTCGTGGACGTTCTTTGTCAGTTAGCTGAGAGA GGTCATGCTAACTATGTGCGAGCTATGCTGGAATATCCACTTAAACATTGCCCAGAGATCTTACTACTAGGGATGTCGCATGTAATTACTGCTTATAACC TGCTGCAATATGAGGTGGTGTTTAAGGTTTTCCATATACTCATCAAAAGCTCCAATGGTGCTGACATGATCATGTACCTCTGGCATGTAAACCCTGGCCT TGTTGTTAGAGGGTTTGTGGACGTTCAAAATAGTGATCCAGATATCATGGCTAAAATTGTAGACCTTTGCCAGGAACTGAAGATTCTCTCTTCAGTGTTG GAGTTGATTCCTTTCCGTGTTGGCATAAGATTAGCTGCCCTTGCTTCACGGAAAGAGTGGCTGGACCTGGAGAACTGGTTGACTAATAATATAGTAACAT TTAAGGATTCATTTTTTGAGGAGTGCCTCAAGTTTCTGAAGGAATCTCAGCTTGGTGGATCGCAAGATTTTTCGGGGAAACCTTTTCGCCATGGGAATGC TGCTGGGAATTTGAACATTAACACCAGTTCCACAATTTTGAAGGCTCTTAAGGCTCACAGCCCCCTGATTGTTGATATCAAACTTTCCGAGGAAATGGAG AGGTTGTTAGCAACGACTTTGGATTCAAATCCTAGGCTTCAGAATGGTGCCTCTGCTGAGTCATCTTCCCCTGATGGCTATTCGGATGATTTTTTTTGGA GTTCGGTTATCAAGCACCAACTGGTAACACATGTAACTCTTGGAATTGCATTACGTGGTGTCCTAGATGCACTACGCAAGCCTCCAGATTCAAAAATGTT TGTGTTTGGTACCAAGGCGCTGGAACAGTTCGTGGATCGTCTGACTGAATGGCCACAGTATTGCAATCATATCTTGCAAATATCTCATCTTCGTGGCGCT CATTCTGAGCTCTTTGCTTTCATTGAACGGGCACTAGCCAGAATTTCATCGGGGCATTTAGAGACAGAAGATGGCAATGCCTCTGCAAGTCACCAACATG CTCTTCCACAAGCTGTATCAGGGAACGATGAGTTCAATGCTATTAACTTAACACCTCCTGTGCAGCAACCATCATCTCTGCCCAACATCCAACAGAGAGT TGAAGTTCCCCTTGATGACCGCCATAAGCTATCTTTAGCTTTATCTAATGACTTTAAACCGCCTTTATCAAGTGGACAATCTACTGTTGGTTCCGTACCT GATCTGTCTACCCTTCAGAGAAGCGTTTCTACCACCCAGGCTATGTCGTCCTCTTCACCTGGTTTCTTGCGGCCTACTCGCAGTGTTACCTCTACCAGGT TTGGCTCGGCACTGAACATTGAAACACTTGTAGCAGCTGCAGAGAGAAGAGAGACACAAATTGAGGCAAAATCTAGAGAATTCAGTGAAATACTGACTGA ACATTTTTATCCCTGGTTTGCTCAGTACATGGTCATGAAAAGAGCGAGCATTGAGCCAAATTTCCATGACTTGTACTTGAAGTTTCTAGACAGAATTAAT TTAAAGGCTCTGAATAAGGAGATTGTTCAAGCCACATATGAAAATTGCAAGGTTCTGTTAGGATCAGAGCTTATAAAATCAAGTTCAGAAGAGCGTTCGC TGCTAAAGAATTTGGGGAGCTGGCTTGGTAAATTAACAATTGGCCGAAACCAGGTTTTAAGGGCCCGCGAGATAGATCCCAAATCTTTGATCATAGAGGC ATATGAGAAAGGGTTAATGATTGCTGTTATTCCATTCACATCAAAGGTTCTTGAACCATGCCAAAGCAGTCTTGCATATCAACCACCCAATCCTTGGACA ATGGGAATCCTGAGCTTGCTTGCTGAGATTTACTCAATGCCCAATTTGAAAATGAACTTGAAATTTGACATGGAGGTGATGTAA
AA sequence Show only first row Show all	>Lus10042877 pacid=23181774 polypeptide=Lus10042877 locus=Lus10042877.g ID=Lus10042877.BGIv1.0 annot-version=v1.0 MSKLSMMVPNQIRFLLQSLNGANADSVFRELCQFSDYGVEGSILLLQICFEHLNIYRTDLQNVHLEQVLESIFKFLMTKPNFSTVFCQSLGSVVISEHVL ESLSSSLHLTVQEKIGVGLALSDSDGLDTRMYAKNFCMSLLEELCANPVSITSTEQIQNIVMFLQRSEDFSKHVDQFMQMLSLTRSNDVIPFVLTPLLSE ELREKNFLRTIDCFYASEESEFDAILADMEKEMSVGDIVEELGYGCTLDASHCTEILALFPPLTEITISRILGAIVRSQTGLEDNQSTFSTFSTALGYGF SNDLPTVSSWDVEVLVRTVMQLDPFPLHAICRVPWKNTEGQLSILRYAVLAPPEVLTFAHSGRQLAYMDADNGHKLQAGCANQAWLCIDLVDVLCQLAER GHANYVRAMLEYPLKHCPEILLLGMSHVITAYNLLQYEVVFKVFHILIKSSNGADMIMYLWHVNPGLVVRGFVDVQNSDPDIMAKIVDLCQELKILSSVL ELIPFRVGIRLAALASRKEWLDLENWLTNNIVTFKDSFFEECLKFLKESQLGGSQDFSGKPFRHGNAAGNLNINTSSTILKALKAHSPLIVDIKLSEEME RLLATTLDSNPRLQNGASAESSSPDGYSDDFFWSSVIKHQLVTHVTLGIALRGVLDALRKPPDSKMFVFGTKALEQFVDRLTEWPQYCNHILQISHLRGA HSELFAFIERALARISSGHLETEDGNASASHQHALPQAVSGNDEFNAINLTPPVQQPSSLPNIQQRVEVPLDDRHKLSLALSNDFKPPLSSGQSTVGSVP DLSTLQRSVSTTQAMSSSSPGFLRPTRSVTSTRFGSALNIETLVAAAERRETQIEAKSREFSEILTEHFYPWFAQYMVMKRASIEPNFHDLYLKFLDRIN LKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWT MGILSLLAEIYSMPNLKMNLKFDMEVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	0	1
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	1.0	0.9954
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	2.0	0.9840
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	2.4	0.9833
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	2.4	0.9793
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	3.2	0.9796
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	3.3	0.9751
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	3.5	0.9827
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	3.7	0.9785
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	3.9	0.9735
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	4.0	0.9783

Compare expression of checked genes

Lus10042877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.