Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45060 272 / 8e-92 Uncharacterised conserved protein UCP022280 (.1) AT4G26410 105 / 4e-27 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028177 [exp] 432 / 5e-155 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Lus10035249 [exp] 119 / 4e-32 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10034621 [exp] 118 / 8e-32 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10013474 [exp] 114 / 2e-30 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10007935 [exp] 105 / 2e-27 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142900 [exp] 300 / 1e-102 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 271 / 2e-91 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1) Potri.001G001300 [exp] 124 / 3e-34 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042878 pacid=23182009 polypeptide=Lus10042878 locus=Lus10042878.g ID=Lus10042878.BGIv1.0 annot-version=v1.0 ATGACTACCGTTGCAGACGCATCGCCGGAGGAGAAACCTAAACCATCACCGGCAAGCAGTTTTCCAGCGGAGATCACCTCGAAAGCACTTGCAGAAGCCG CACCATGGATGGACCACACCGTACAGCAAGCTCTGAGTTACCAAAAGACCGCAGAGGAGAAGCTCGACGCTTTCGTTGAAGCGACCAGATCCCGCATCTC TGATATTCGCTCCACCGGTTCTGCCCACCTTGAACAGACTATCTATTCTATACAATGTGCTGCATCGGAGCTTGGCGTTTATGAGGATTTTGCATTTAAA AAGCTTAACGAGGGTGTACAAATTGCAGCTTCACATCCGTTTATCACGGCTGGGGTTACTGCCGGTTTGGGGCTTGTGCTGCTTAAGAGTCCAAGGCGGT TTATTTACTACAAAACCTTGCGTCTTGTATCCAGCGAAGAGACATTGCTTTCCCGTGCCGATGCTAAAGTAAAGGAGTTGCGGCAGTCTATGAGCCTCCT CAAGGCTGAAAGTGAGAAACTGGAGCGGAGAGCATTACTAGCAGAAGGAGAATTCATCCGAGGAAGGAAAAAACTGAGACAAACGGGAAAGCAGATCCAG GGTGTTATTCGGTCAGCTTATAAGATTGAAAGACAAGCTGCAGGCTTGAAAGATGTCCTCCAAGAACTGCCTGGTAGGGAAGCGTATCGATTTCGGGCAC AAGTTAAAGACGTTGCTAATGAGGCGAAGAAAGAGAAGCATGTATTGAGCAAGGAGGTTACAAAGATCAGCAACTATGGGATCTCGGTTTGA
AA sequence Show only first row Show all	>Lus10042878 pacid=23182009 polypeptide=Lus10042878 locus=Lus10042878.g ID=Lus10042878.BGIv1.0 annot-version=v1.0 MTTVADASPEEKPKPSPASSFPAEITSKALAEAAPWMDHTVQQALSYQKTAEEKLDAFVEATRSRISDIRSTGSAHLEQTIYSIQCAASELGVYEDFAFK KLNEGVQIAASHPFITAGVTAGLGLVLLKSPRRFIYYKTLRLVSSEETLLSRADAKVKELRQSMSLLKAESEKLERRALLAEGEFIRGRKKLRQTGKQIQ GVIRSAYKIERQAAGLKDVLQELPGREAYRFRAQVKDVANEAKKEKHVLSKEVTKISNYGISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	0	1
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10019341 [exp]	4.7	0.8724
AT1G65270			unknown protein		Lus10026847 [exp]	7.3	0.8749
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	7.5	0.8750
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	7.5	0.8891
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	7.9	0.9081
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	9.5	0.8733
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	9.7	0.8976
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	16.3	0.8789
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	17.1	0.8908
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	22.4	0.8833

Compare expression of checked genes

Lus10042878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.