Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02070 59 / 6e-12 unknown protein AT3G60520 57 / 4e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028179 [exp] 140 / 6e-44 AT3G60520 113 / 2e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058300 [exp] 74 / 1e-17 AT3G60520 134 / 2e-41 unknown protein Potri.002G142600 [exp] 72 / 6e-17 AT3G60520 138 / 4e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042880 pacid=23181991 polypeptide=Lus10042880 locus=Lus10042880.g ID=Lus10042880.BGIv1.0 annot-version=v1.0 ATGGTGGACGACGATAAGCAGACAGTATGCTGTATGTGCGGTGACGTAGGGTTCGCCGAAAAGCTCTGTAGAGTTTACTGTAGAAGTTGGTTTACCAGCA ACTACTACAGCAACAGCAGCCAGCAGCTGTCATCGGAGGCAATTGAAGAGTGCGATTGGTGCCGGAGCGAGGAGATTAAAAATGGCAGCTACAGGGCACC GTCGTCGTCAAGGAAAACGTTGTCGGGCGGAAGTGGGAGTAGTAGTAATGCTGGATCGGAGTATTCGGGTCATAATAAGATGATAAAACAGGAGGAAATA ATTAGTAGGGAAAGGCAGCAGTCAGCTGCGGCGGGTGTGGTCGGGAGGAATAATAATCACGGCGGACTCCCTTCTCCCAAGACGCGGAGGTACAAGCTCC TCAAGGACGTCATGTGCTAG
AA sequence Show only first row Show all	>Lus10042880 pacid=23181991 polypeptide=Lus10042880 locus=Lus10042880.g ID=Lus10042880.BGIv1.0 annot-version=v1.0 MVDDDKQTVCCMCGDVGFAEKLCRVYCRSWFTSNYYSNSSQQLSSEAIEECDWCRSEEIKNGSYRAPSSSRKTLSGGSGSSSNAGSEYSGHNKMIKQEEI ISRERQQSAAAGVVGRNNNHGGLPSPKTRRYKLLKDVMC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60520			unknown protein		Lus10042880 [exp]	0	1
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	2.2	0.8407
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	6.2	0.8150
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	7.7	0.7993
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	8.8	0.8024
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10025014 [exp]	9.2	0.7326
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	10.0	0.7868
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	15.6	0.7723
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	21.3	0.7803
AT4G37920			unknown protein		Lus10029560 [exp]	25.0	0.7479
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10020258 [exp]	27.7	0.6975

Compare expression of checked genes

Lus10042880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.