Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45040 180 / 9e-57 Matrixin family protein (.1) AT4G16640 156 / 4e-47 Matrixin family protein (.1) AT1G70170 130 / 3e-37 MMP matrix metalloproteinase (.1) AT1G24140 127 / 1e-35 Matrixin family protein (.1) AT1G59970 121 / 6e-34 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028180 [exp] 267 / 1e-91 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10028955 [exp] 170 / 2e-52 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10004728 [exp] 164 / 5e-50 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10007478 [exp] 158 / 9e-48 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10030662 [exp] 120 / 3e-33 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10005605 [exp] 88 / 1e-21 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10032175 [exp] 88 / 2e-21 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 88 / 2e-21 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10041294 [exp] 86 / 1e-20 AT1G59970 177 / 3e-53 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058200 [exp] 181 / 9e-57 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.001G157500 [exp] 174 / 3e-54 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 167 / 1e-50 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.015G103900 [exp] 140 / 7e-41 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 140 / 7e-41 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 121 / 2e-34 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.019G073700 [exp] 108 / 3e-29 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.019G073800 [exp] 103 / 2e-27 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.013G033200 [exp] 103 / 2e-27 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073400 [exp] 97 / 8e-25 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10042881 pacid=23181885 polypeptide=Lus10042881 locus=Lus10042881.g ID=Lus10042881.BGIv1.0 annot-version=v1.0 ATGCAACTAGATTCCCCACGCGCAAAGCTGACGTACGCCTTCTCCCCTGAAAACACCATCGATTACCTGCCGCTATATTCCATCCGCGAAGCCTTCTGCC GGGCTTTTCAGCGGTGGAGCTTGGTGATTCCGGTGAGCTTTACGGAGGAGGAGGACAACGGGTTCTCCGACGTCAAGATCGGGTTCTACAGCGGGGACCA CGGCGACGGGGAGCCCCACTCTTTCTCGCCGGAGAGCGGGCGGCTCCACCTCGACGCGGCGGAGAGGTGGGCTTTTGATTTCGCGGTGGAGAAGTCAAAG GTTGCCGTAGACTTGGAGTCCGTGGCGGTCCATGAGATACGACACGTGTTGTGGCTGGCCCACTCGGGGGATAAAGATGCGATTATGTATCCTAGCTTGA AGCCCAGGAAGAGGAAAGTTGAGCTTAGCTTGACGATATAA
AA sequence Show only first row Show all	>Lus10042881 pacid=23181885 polypeptide=Lus10042881 locus=Lus10042881.g ID=Lus10042881.BGIv1.0 annot-version=v1.0 MQLDSPRAKLTYAFSPENTIDYLPLYSIREAFCRAFQRWSLVIPVSFTEEEDNGFSDVKIGFYSGDHGDGEPHSFSPESGRLHLDAAERWAFDFAVEKSK VAVDLESVAVHEIRHVLWLAHSGDKDAIMYPSLKPRKRKVELSLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45040			Matrixin family protein (.1)		Lus10042881 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10001198 [exp]	12.5	0.6526
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10001112 [exp]	52.8	0.5020
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	125.8	0.5457

Compare expression of checked genes

Lus10042881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.