Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT5G65940 286 / 4e-95 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 282 / 1e-93 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 279 / 1e-92 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 239 / 6e-77 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 159 / 1e-45 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G13360 155 / 3e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16800 50 / 8e-07 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 45 / 2e-05 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028182 [exp] 586 / 0 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10010685 [exp] 394 / 5e-137 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 391 / 7e-136 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 269 / 1e-86 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10020758 [exp] 224 / 8e-71 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 221 / 1e-69 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 151 / 1e-42 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 137 / 9e-37 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 61 / 2e-10 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057400 [exp] 471 / 2e-167 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 400 / 2e-139 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G156900 [exp] 370 / 5e-128 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G179000 [exp] 274 / 2e-90 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 243 / 9e-78 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 242 / 1e-77 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 238 / 3e-76 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 237 / 5e-76 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 234 / 6e-75 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.002G057700 [exp] 223 / 3e-70 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10042883 pacid=23181655 polypeptide=Lus10042883 locus=Lus10042883.g ID=Lus10042883.BGIv1.0 annot-version=v1.0 ATGGGCGCTCGATTGAACAGATTGTACAATTCGTGGGAAGATGATCCTAATGTTGGATTTGTGGCCATGAAGGGCAGTGGCAGGGCATTTTGCGCTGGTG GGGATATTGTTTCTCTTCATCACTTCATAAACCAGGGGAAGTTGGATGTCTGCAAAGAATTCTTTTCTACATTGTACAGTTATATGTACCTGCTAGGTAC ATACTTGAAGCCAAATGTTGCTCTACTGAATGGCATCACTATGGGTGGTGGTGCGGGAGTTTCGATTCCTGGGATGTTTAGGGTTGCGACTGAAAGAACT TTATTTGCTACCCCTGAAACCCTTATTGGTTTTCACCCTGATGCTGGTGCATCATTCTACCTTTCACGTTTACCTGGTCATTTAGGTGAATATCTTGCCC TTACGGGTGAGACACTGAAGGGAGCTGAAATGATTGGTTGTGGCTTAGCTACTCATTACACTCACAGTACAAAGCTTGGATTAGTTGAGAGAAAGTTGGC TGATCTGGCCACTGATGATCCTTCTGTAATTGAAACTTCATTAGAAGAATATGGTGACCTTGTCCATCCAGATAAGATGAGTGTACTTCACAGGATTGAA ACGGTTGATAAATGTTTCAGCCAGAAGACAGCTGAAGAAATCATAGATGCTTTGATACGAGACGGCAGATTTGAGACACTGGATCAGTGCTTAGTCCGTG AATATAGAATGTCTCTACAGGGGATCTCCCAGCCAGACTTCTGCGAGGGTGTTAGGGCACGTATGGTAGACAAGGACTTGGCTGCAAAGTGGAATCCCCC AAGGTTGGAGCAGGTGACAGATGACATGGTTGATCGTTATTTCGCTCCGCTAAGTGAATCTGAACCGGATCTGGAGCTTCCGACGCAGCAGCGGGAAGCA TTTACCTCATAA
AA sequence Show only first row Show all	>Lus10042883 pacid=23181655 polypeptide=Lus10042883 locus=Lus10042883.g ID=Lus10042883.BGIv1.0 annot-version=v1.0 MGARLNRLYNSWEDDPNVGFVAMKGSGRAFCAGGDIVSLHHFINQGKLDVCKEFFSTLYSYMYLLGTYLKPNVALLNGITMGGGAGVSIPGMFRVATERT LFATPETLIGFHPDAGASFYLSRLPGHLGEYLALTGETLKGAEMIGCGLATHYTHSTKLGLVERKLADLATDDPSVIETSLEEYGDLVHPDKMSVLHRIE TVDKCFSQKTAEEIIDALIRDGRFETLDQCLVREYRMSLQGISQPDFCEGVRARMVDKDLAAKWNPPRLEQVTDDMVDRYFAPLSESEPDLELPTQQREA FTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10042883 [exp]	0	1
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	4.5	0.8590
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	12.7	0.8263
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	14.1	0.8061
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	17.3	0.8322
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	18.5	0.8487
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	19.4	0.8366
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	19.5	0.8077
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	20.0	0.8348
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	20.5	0.8469
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	22.8	0.8311

Compare expression of checked genes

Lus10042883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.