Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) AT5G51400 281 / 5e-96 PLAC8 family protein (.1) AT2G40935 91 / 3e-22 PLAC8 family protein (.1.2.3) AT1G49030 63 / 6e-12 PLAC8 family protein (.1) AT1G14870 61 / 1e-11 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18450 61 / 4e-11 PLAC8 family protein (.1) AT1G14880 58 / 2e-10 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT5G35525 57 / 3e-10 PLAC8 family protein (.1) AT3G18460 57 / 8e-10 PLAC8 family protein (.1) AT1G68630 54 / 4e-09 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028184 [exp] 476 / 2e-173 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10027214 [exp] 319 / 8e-111 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 321 / 5e-110 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10031733 [exp] 280 / 6e-96 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10005257 [exp] 77 / 6e-17 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10019478 [exp] 71 / 9e-15 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 68 / 1e-13 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 64 / 9e-13 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 60 / 3e-11 AT1G68630 122 / 2e-36 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141600 [exp] 324 / 5e-113 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.003G108800 [exp] 323 / 5e-113 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.001G124500 [exp] 311 / 3e-108 AT5G51400 330 / 1e-115 PLAC8 family protein (.1) Potri.006G024900 [exp] 86 / 2e-20 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G108800 [exp] 74 / 6e-16 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 72 / 2e-15 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 71 / 5e-15 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 70 / 1e-14 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 68 / 7e-14 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 65 / 8e-13 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10042885 pacid=23181913 polypeptide=Lus10042885 locus=Lus10042885.g ID=Lus10042885.BGIv1.0 annot-version=v1.0 ATGGGAGACAGCGGAAGCGCCCAATCGAGGTACGTGAAGTTAACGAAGGAACAAGCTCCACCTGTAGAAGACATCACTCCCGGCGAACTCAACCAGCCAA TCCAAGTCCCTCAGCTGATCATCCACAGATGCCACGAATGCGGACAACCTCTGCCAGAGAGCTACGAGCCTCCAGCCGACGAGGACTGGGCCACCAGCAT ATGCGCCTGCACCGAAGATTTCGAAAGCTGTCGGACCGGGTTTTTCTGTCCGTGCGTGTTATTCGGACAGAACGTGGAGACATTAAGGGAAGACATACCG TGGAACAATGCATGCATGTGTCACGCCATATGCGTGGAAGGAGGAGTGGCTATGGCAGCGGCCACTTTACTCTTTGGAGGTATAGACATCAGGACATCAT TCCTTATCTGCGAAGGATTGTTCTTCGCTTGGTGGATGTGCGGAATTTACACCGGACTGTTTCGTCAATCGCTCCAGAAGAAGTACCATCTCAAGGACTC TCCTTGCGATCCATGTTTAGTGCACTGCTGCCTGCACTGGTGTGCACTTTGTCAAGAACATAGGGAGATGAGCAACCATCTCTCCGACCAAGCCTCATTG TTACAGATGACTGTCATCAACCCTCCTTTTGTCCAGCAAATGACTAGTACTAGTACTGCTACTACCAATGCACAACCAGTTATATCAGACAGTGGCCATG TCACTCTCGAGATACAACCTGTTTAG
AA sequence Show only first row Show all	>Lus10042885 pacid=23181913 polypeptide=Lus10042885 locus=Lus10042885.g ID=Lus10042885.BGIv1.0 annot-version=v1.0 MGDSGSAQSRYVKLTKEQAPPVEDITPGELNQPIQVPQLIIHRCHECGQPLPESYEPPADEDWATSICACTEDFESCRTGFFCPCVLFGQNVETLREDIP WNNACMCHAICVEGGVAMAAATLLFGGIDIRTSFLICEGLFFAWWMCGIYTGLFRQSLQKKYHLKDSPCDPCLVHCCLHWCALCQEHREMSNHLSDQASL LQMTVINPPFVQQMTSTSTATTNAQPVISDSGHVTLEIQPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	2.0	0.9875
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	3.2	0.9851
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	3.5	0.9801
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	3.5	0.9815
AT1G53050			Protein kinase superfamily pro...		Lus10006800 [exp]	4.2	0.9283
					Lus10032472 [exp]	4.5	0.9778
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	5.5	0.9671
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	8.9	0.9509
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	9.8	0.9134
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	10.2	0.9594

Compare expression of checked genes

Lus10042885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.