Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45000 348 / 8e-110 EMB2766 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028186 [exp] 419 / 7e-133 AT2G44980 1105 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) Lus10042887 [exp] 59 / 7e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057000 [exp] 357 / 6e-112 AT2G45000 371 / 1e-116 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05064 [flax] [poplar] Nsp1_C Nsp1-like C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10042886 pacid=23181789 polypeptide=Lus10042886 locus=Lus10042886.g ID=Lus10042886.BGIv1.0 annot-version=v1.0 ATGTCGTCCTCATCGTCTTCTTCCCAATTCGCATTCGCCTCCTCCGTTCCCGCCTTCGGATCCACCCCCGGCTCCACCGCTGCCCCAGCCTTTTCATTCG GATCTTCCTCTTCCTTTGGCGCCAACCCTAGCTCACCAGCGTTTGGCTTCAGCACCTCCTCCGCGGTACCTAACCCTAGCTCTGCTGCTTCTACCTCTAC CTTCGCATTTTCCCCCTCTTCTGCTTCCTCAGCGCCTTCTGCTTCGCCTGCTTCCTCAGCTCCTTCCTTCGGTTTCGGATTGACGCCTTCCTCGTCTTCT GCTTCTACTTCCGCCGCCCCTGCCTTCTCATTTCCCTTCGCCTCCTCCTCTGCAGCTGCTACTGCTCCCTCTCTGTTTTCCTCCGCTGCTAGCTCTTCGG CAACTCCAGGATCGTCCTTTTTAGGTTCACTTTCCTCCGCTGCCGCTACTGGCTCAACCTTGTTTGGAGGTGCTGCTGTTACTGCTTCTACATCCTCACT GTTTAGTTCGACTTCATCTGCGCCTGCAAGTTCACCTTCGTTGTTTGGGGCAGTTTCATCGGCGCCAGCATTTGCAACAGTCTCCCCTTCACCTGCTAAT TCTGCTGCACCACTGTTCCCTACAACCGCAACTTCTGCTTCTCCTCTCTTTGGGACTGGTTCTTCGTTGACAAGTACCGGTCAATCATCGTCTTTATTTT CGGTTCCCTCATCCGCTGGAAGTTCACCTTTTGGTGCCCTGTCACCTGCCAGTTCTGCTTTACCTCTATTTGGATCTTCATCTGCCACTTCAACCAACAC CACTAGCTTGTTTGGCCCTTCCTCTACTGCATCTACAACTACTACTACTAATACAACCCCTTTCTCTGGCGGATTTTCCTTCACCAAGACCACTTCTAGC TCAACAGCAGCCGTAGGCGTAACACCTTCAGCAGCTCCTGCTGCAACAAAATCATCATCCTCCTCTGGAAGCAGTTCAAGCTTTTCGTTTGGGATACCAC CTGCTGCTGGTGCTGCATCTTCACAACCTTCCTTCGGGTTTGGCAATGCGGCTTCTTCCTCTTCCCCGGTTCTCTCCAGCACAATTGCTGCCAAGCACAC ATCATCCTCTTCATTGTTCTCCACTGTCACAACTGCAACTGCGTCAACTACTGCTGTAAGTTCGGCAGCTGCAGCTTCAGTGCCAACTTCATCTACTACA ACCAGTGCAGCTGGCACCGGCGCTTTCACAGGTTTTGGAGTTTCCACTACTGCAGCGTCATCTGCCACTACTACCCCCTTTACTGCATTTTCAATGCCAG GTGCTGCTTCATCTTCAAAAGCTCTAACAAGTTCCTCTACGACTACAACTGCTCCCACATCATTGTCTCTTGTGCCTTCTAGCAGCGGGACCAGTTCCAG TGTCATCACTACCGTAACCGCTGAGCCAAAGTTGCCATCCGAGATAGCTGGAAAAACTGTCGAAGAGATCATAAAAGAGTGGAATTCAGAGCTGCAAGAG CGCACTGGAAAGTTCCGAAAGCAAGCCACAGCAATAGCTGACTGGGACAAGAGAATATTGCAAAACCGTGATGCTCTTCTGAGGCTTGAGATTGAAGTGG CAAAAGTGGTTGAGACTCAAGCTAACTTGGAACGGCAATTGGAGTTAATTGAGACTCATCAACAAGAGGTTGACAAGGCTTTGGAGAGCATGGAAAATGA GACTGAACGTATATACAAGGATGAGCGCGGGTTGCTTCTGAATGATGACGCTGCTTCGACAAGGGATGCGATGTATGAACAAGCTGAGATTGTGGAGAGG GAATTGGAACAGACGACAGAACAGATCAAGTCTGTGATAGATAACCTAAATGCCAGCCAGGGTGGTGAGCTTGATCCGATAGATGGGATGACACCATTGG ACGTCGTTGTTCGAATATTGAACAATCAATTGAGTTCGTTAATGTGGATTGATGAGAAGGCGGAAGAGTTTTCTTCAAGGATCCAAAAGGTTGCCTCGGA AGGTTCAACTGTAGCAGATAGGGAACCAGTGGGTCCAAGATTGTGGCTGTCTTAA
AA sequence Show only first row Show all	>Lus10042886 pacid=23181789 polypeptide=Lus10042886 locus=Lus10042886.g ID=Lus10042886.BGIv1.0 annot-version=v1.0 MSSSSSSSQFAFASSVPAFGSTPGSTAAPAFSFGSSSSFGANPSSPAFGFSTSSAVPNPSSAASTSTFAFSPSSASSAPSASPASSAPSFGFGLTPSSSS ASTSAAPAFSFPFASSSAAATAPSLFSSAASSSATPGSSFLGSLSSAAATGSTLFGGAAVTASTSSLFSSTSSAPASSPSLFGAVSSAPAFATVSPSPAN SAAPLFPTTATSASPLFGTGSSLTSTGQSSSLFSVPSSAGSSPFGALSPASSALPLFGSSSATSTNTTSLFGPSSTASTTTTTNTTPFSGGFSFTKTTSS STAAVGVTPSAAPAATKSSSSSGSSSSFSFGIPPAAGAASSQPSFGFGNAASSSSPVLSSTIAAKHTSSSSLFSTVTTATASTTAVSSAAAASVPTSSTT TSAAGTGAFTGFGVSTTAASSATTTPFTAFSMPGAASSSKALTSSSTTTTAPTSLSLVPSSSGTSSSVITTVTAEPKLPSEIAGKTVEEIIKEWNSELQE RTGKFRKQATAIADWDKRILQNRDALLRLEIEVAKVVETQANLERQLELIETHQQEVDKALESMENETERIYKDERGLLLNDDAASTRDAMYEQAEIVER ELEQTTEQIKSVIDNLNASQGGELDPIDGMTPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKVASEGSTVADREPVGPRLWLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Lus10042886 [exp]	0	1
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	2.0	0.8802
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	13.0	0.8532
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	26.5	0.7976
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	27.0	0.8031
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	27.4	0.8419
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	33.3	0.8367
AT1G07970			unknown protein		Lus10023345 [exp]	36.5	0.8391
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	38.0	0.8107
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	44.5	0.8369
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	45.2	0.7624

Compare expression of checked genes

Lus10042886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.