Plant FIBer expression Database

Lus10042887 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042886
[exp]
290 / 4e-91 AT2G45000 410 / 2e-133 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10042887 pacid=23181665 polypeptide=Lus10042887 locus=Lus10042887.g ID=Lus10042887.BGIv1.0 annot-version=v1.0
ATGGTCGCAGATGTTTTACCTGGCATTGAAAATGCAGTAAAGGGGGTAGTAGTGGCAGATGACGCTGCAGTAGTGGAAACTCCAAAACCTGTGAAAGCGC
CGGTGCCAGCTGCACTGGTTGTAGTAGATGAAGTTGGCACTGAAGCTGCAGCTGCCGAACTTACAGCAGTAGTTGACGCAGTTGCAGTTGTGACAGTGGA
GAACAATGAAGAGGATGATGTGTGCTTGGCAGCAATTGTGCTGGAGAGAACCGGGGAAGAGGAAGAAGCCGCATTGCCAAACCCGAAGGAAGGTTGTGAA
GATGCAGCACCAGCAGCAGGTGGTATCCCAAACGAAAAGCTTGAACTGCTTCCAGAGGAGGATGATGATTTTGTTGCAGCAGGAGCTGCTGAAGGTGTTA
CGCCTACGGCTGCTGTTGAGCTAGAAGTGGTCTTGGTGAAGGAAAATCCGCCAGAGAAAGGGGTTGTATTAGTAGTAGTAGTTGTAGATGCAGTAGAGGA
AGGGCCAAACAAGCTAGTGGTGTTGGTTGAAGTGGCAGATGAAGATCCAAATAGAGGTAAAGCAGAACTGGCAGAACCAGTCCCAAAGAGAGGAGAAGCA
GAAGTTGCGGTTGTAGGGAACAGTGGTGCAGCAGAATTAGCAGGTGAAGGGGAGACTGTTGCAAATGCTGGCGCCGATGAAACTGCCCCAAACAACGAAG
GTGAACTTGCAGGCGCAGATGAAGTCGAACTAAACAGTGAGGATGTAGAAGCAGTAACAGCAGCACCTCCAAACAAGGTTGAGCCAGTAGCGGCAGCGGA
GGAAAGTGAACCTAAAAAGGACGATCCTGGAGTTGCCGAAGAGCTAGCAGCGGAGGAAAACAGAGAGGGAGCAGTAGCAGCTGCAGAGGAGGAGGCGAAG
GGAAATGAGAAGGCAGGGGCGGCGGAAGTAGAAGCAGAAGACGAGGAAGGCGTCAATCCGAAACCGAAGGAAGGAGCTGAGGAAGCAGGCGAAGCAGAAG
GCGCTGAGGAAGCAGAAGAGGGGGAAAATGCGAAGGTAGAGGTAGAAGCAGCAGAGCTAGGGTTAGGTACCGCGGAGGAGGTGCTGAAGCCAAACGCTGG
TGAGCTAGGGTTGGCGCCAAAGGAAGAGGAAGATCCGAATGAAAAGGCTGGGGCAGCGGTGGAGCCGGGGGTGGATCCGAAGGCGGGAACGGAGGAGGCG
AATGCGAATTGGGAAGAAGACGATGAGGACGACATTTTGCTCCGCCTCTGGGAAATTTTCTGA
AA sequence
>Lus10042887 pacid=23181665 polypeptide=Lus10042887 locus=Lus10042887.g ID=Lus10042887.BGIv1.0 annot-version=v1.0
MVADVLPGIENAVKGVVVADDAAVVETPKPVKAPVPAALVVVDEVGTEAAAAELTAVVDAVAVVTVENNEEDDVCLAAIVLERTGEEEEAALPNPKEGCE
DAAPAAGGIPNEKLELLPEEDDDFVAAGAAEGVTPTAAVELEVVLVKENPPEKGVVLVVVVVDAVEEGPNKLVVLVEVADEDPNRGKAELAEPVPKRGEA
EVAVVGNSGAAELAGEGETVANAGADETAPNNEGELAGADEVELNSEDVEAVTAAPPNKVEPVAAAEESEPKKDDPGVAEELAAEENREGAVAAAEEEAK
GNEKAGAAEVEAEDEEGVNPKPKEGAEEAGEAEGAEEAEEGENAKVEVEAAELGLGTAEEVLKPNAGELGLAPKEEEDPNEKAGAAVEPGVDPKAGTEEA
NANWEEDDEDDILLRLWEIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10042887
[exp]
0 1
AT5G40830 ATRAD3, ATATR S-adenosyl-L-methionine-depend... Lus10007385
[exp]
1.0 0.9808
AT1G62500 Bifunctional inhibitor/lipid-t... Lus10032262
[exp]
2.0 0.9721
AT5G48490 Bifunctional inhibitor/lipid-t... Lus10038233
[exp]
3.5 0.9689
AT5G54970 unknown protein Lus10032643
[exp]
5.1 0.9509
AT2G45290 Transketolase (.1) Lus10004750
[exp]
8.0 0.9523
AT5G55410 Bifunctional inhibitor/lipid-t... Lus10032575
[exp]
10.7 0.9568
AT1G68150 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1... Lus10035971
[exp]
13.0 0.9556
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Lus10001637
[exp]
13.4 0.9575
AT3G63200 PLP9, PLAIIIB ,... PATATIN-like protein 9 (.1) Lus10022040
[exp]
13.5 0.9505
AT1G08460 HDA8, HDA08, AT... histone deacetylase 8 (.1) Lus10001850
[exp]
13.7 0.9492

Lus10042887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.