Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44970 612 / 0 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028185 [exp] 886 / 0 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011122 [exp] 427 / 6e-146 AT2G44970 425 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055900 [exp] 660 / 0 AT2G44970 639 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G085600 [exp] 462 / 2e-158 AT2G44970 470 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042889 pacid=23182001 polypeptide=Lus10042889 locus=Lus10042889.g ID=Lus10042889.BGIv1.0 annot-version=v1.0 ATGTTGGTGGAGGAAGCTGGAGAGATTCCTAGAAGTGAAGAGCCAGGCGCTCCTCTGTTGAATCAAAGGCTTACCTCACAACCGTTGTTGTTTCAGCAGC AGGATGGTGCCCACAGCAGTGATGGTGCTGCTGGTCCGCAGCTATTCACTTCCGTTCCAAGTCTGAATGAAGCTGCTAATTACCTTTCCCAAACAACTTC CTTGATTACCAGTTGCTTCCCTTCAGTGGAGTTTCCTGCGAGAGATTTTGGATATTCAGTCCCTCATGACCAGGAATTGTTATCAGCCTCTCGTGCTCCA ACTCAGCAATCTTCAGCGGGCACCGCATCTTCGGGTCCATCAACTTTAGCCAGTAGTCCCCCTTCTGTTGATCGAGTAACTAGAACTTCTTCAGCCACCC CATCTGAAAGTACTGGTGCACTTGTACCATATAGTGGTCTGAACGGAATCTCAATTTTTCAAGGACTTATTGAGAGGGCACGTAGAACTGTTCGTGGGTC TGCTGATGATATAGGGTGGCTACAACGTGCACCGGGGATGCCTCCGGTTGAAGATGGAACTGAAAGGTTTATGGAGATTCTTAATAGCATAAGGCATGGT GTGCACAGGTTGCCCCAGACTATGGTTTACTTGTTAGTTCCAGGGCTCTTCAGCAATCATGGACCACTTTATTTTGTTAATACGAAACAGTTTTTTTCAA AGATGGGTCTCACTTGTCACATTGCCAAGATTCACAGCGAGGCATCAGTTGAGAAAAATGCCAGAGAGATTAAAGAATACATTGAGGAAATGTATTGGGG CTCAAATAAACGTGTGATGCTTCTTGGACATAGTAAAGGGGGTATAGACTCGGCTGCTGCTCTATCATTGTACTGGCCTGACTTGCAAGATAAGGTAGCT GGACTAGTACTGTCGCAAAGTCCTTATGGCGGTAGCCCAATTGCATCCGATATTTTACGTGAAGGGCAACTTGGTGACTATGTTAATGTGCGGAAGCTCA TGGAGATTATCATATGCAAAGTAATCAAGCATCACCCGAAACTTGTAAAGGGTGATATGCAAGCCTTGGAAGATCTAACATACGAGAAGAGGAGAGATTT CTTGACGAAACACCCGTTGCCACAAGAGCTTCCAGTTGTATCGTTCCACACGGAAGCCAGCATTTCACCAGCAGTTCTGGCTACGCTTTCTCGGGTAGCT CATGCAGAGGTGCCAATAGTTGGGCCTTTATCCTCTGGCGAGGCAACTAAACTCCCAGTTGTGATGCCTCTTGGTGCTGCAATGGCGGCTTGCGCTCAGC TGCTCCAAGTCCGGTATGGTGAGAAGAGTGATGGACTTGTGACTCGTCGGGACGCGGAGGTCCCTGGATCTGTGGTGGTGCGACCAGCTAGGAAGCTAGA CCATGCCTGGATGGTGTATTCATCACTGAACGATGATCCTTCTGAGGCAGATGCTTCTCAAGTGTGCGAAGCTTTGCTGGAATTGTTGGTTGAAGTTGGG GTGAAGAAAAGGCATCAAATTGAGAGGAAACAGGAATAA
AA sequence Show only first row Show all	>Lus10042889 pacid=23182001 polypeptide=Lus10042889 locus=Lus10042889.g ID=Lus10042889.BGIv1.0 annot-version=v1.0 MLVEEAGEIPRSEEPGAPLLNQRLTSQPLLFQQQDGAHSSDGAAGPQLFTSVPSLNEAANYLSQTTSLITSCFPSVEFPARDFGYSVPHDQELLSASRAP TQQSSAGTASSGPSTLASSPPSVDRVTRTSSATPSESTGALVPYSGLNGISIFQGLIERARRTVRGSADDIGWLQRAPGMPPVEDGTERFMEILNSIRHG VHRLPQTMVYLLVPGLFSNHGPLYFVNTKQFFSKMGLTCHIAKIHSEASVEKNAREIKEYIEEMYWGSNKRVMLLGHSKGGIDSAAALSLYWPDLQDKVA GLVLSQSPYGGSPIASDILREGQLGDYVNVRKLMEIIICKVIKHHPKLVKGDMQALEDLTYEKRRDFLTKHPLPQELPVVSFHTEASISPAVLATLSRVA HAEVPIVGPLSSGEATKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVTRRDAEVPGSVVVRPARKLDHAWMVYSSLNDDPSEADASQVCEALLELLVEVG VKKRHQIERKQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10042889 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	5.4	0.7748
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10038043 [exp]	10.5	0.7393
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	13.1	0.7610
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	13.2	0.7631
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	15.2	0.7574
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	28.1	0.7449
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	32.8	0.7587
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	34.3	0.7107
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	36.4	0.7229
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	37.8	0.7486

Compare expression of checked genes

Lus10042889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.