Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44950 830 / 0 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT1G55250 384 / 2e-119 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT4G03510 54 / 1e-07 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT5G05130 53 / 1e-06 DNA/RNA helicase protein (.1) AT3G58030 52 / 1e-06 RING/U-box superfamily protein (.1.2.3.4) AT4G28270 49 / 3e-06 ATRMA2 RING membrane-anchor 2 (.1) AT2G42030 50 / 5e-06 RING/U-box superfamily protein (.1) AT1G74990 47 / 6e-06 RING/U-box superfamily protein (.1) AT1G19310 48 / 9e-06 RING/U-box superfamily protein (.1) AT2G23780 47 / 2e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028187 [exp] 1407 / 0 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10041689 [exp] 437 / 2e-139 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10024057 [exp] 390 / 4e-122 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10011184 [exp] 55 / 6e-08 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 55 / 6e-08 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10010791 [exp] 50 / 2e-06 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 50 / 2e-06 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10039001 [exp] 50 / 9e-06 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10029292 [exp] 49 / 1e-05 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055800 [exp] 1095 / 0 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.002G141300 [exp] 1089 / 0 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G008800 [exp] 482 / 9e-157 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.003G216651 [exp] 178 / 1e-48 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.009G023300 [exp] 54 / 2e-07 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.001G229600 [exp] 53 / 7e-07 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.006G035700 [exp] 52 / 2e-06 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.011G051800 [exp] 50 / 2e-06 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.014G040400 [exp] 50 / 2e-06 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 50 / 2e-06 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042890 pacid=23181915 polypeptide=Lus10042890 locus=Lus10042890.g ID=Lus10042890.BGIv1.0 annot-version=v1.0 ATGGAGAGCACCGGCGAGCCAGACCGAAAGCGGCGACACTTTAGCTCCTTGTCGCCTACTGCTGTGATGGCGAAGAAGCAGCCGCTCTCTCATTTCTCCG ATGATAAAAAGCTTGACACTGCTGTCCTTCAATTCCAAAACCAAAAGCTTCTACAAAAATTAGAAGCTCAGAAAGTTGAGTACTCCATATTGGAAAGCAA GTACTCCCAGCTCAAAGAGAGGCAGCAGCCTTATGATTCCACATTAAACGCTATCGACAAATCCTGCAAATTGCTGGTTAATGACTTAGAGGCTCGCTCC AAGCAGTTGAGAGAATCAAGTAGTTGGAATGCATCCCAGAAAGCATTAAAAGGTAGGGAGGATATTGCTGTTGTTCCTGAGGATGCTTTCCTTAGCCGAC TCATGGAAACAGGTGCAACCGAAAGCTCATCTGCTAATAATATCCCTGAGCAGATAGATGAAAGCAGGGAAACTGGTTCTGGTAATGTTGAAGTTGTACA GATGGAACCAGAGAGAGATGCTGTCACAAATAAGATGAAGAATATCCTTAAAAATATTGTGCTTGCAATAAATGACCTTTGGCATGTGAAGGATGAATTT CATGCTGCGGTTCTGAAAGAACTTCCCAAAGATGGTGCATGCAGGCAAAAGTCATGTACTGAGTTAGTTATGGAAGTCAAGAACTTCAGATCAACATTAA GTGACCTTCATTTAAAGCACAAAGCGCTGTCGAGGGACTTGCAGGGCAGCCAAGATACCGATGCGAAAGCTAAAGCACAGCTTATGCGATTGAAAGGAGA ATTGGAGACTTCAGTTAGTAAATTACACAGCACTAATTGCAAAATAACAACTCTCAAGGCAGAGAGAGATGCAACAAAAGGAACATTTTTCCCTGTCTTA AACCTGGGAAGTAAACATGATGATGGTGATAAGAGTGAAGAGAAACAAAAAGGTCTTCACGAGATGGAATCTGCAGTCAAAGAGCTCTCTGAACAAGCTT CCTCTCGGTTGGTGGCCTTAAAAGCGTTACATAATGATAGGATAAAAATGCTGGAGCACTTATCTGATTTACAGAACTCATTGAAGAATATCAACTGCAT CTCTTCCTCCCAAATATTCCTTTTAGCAAGGGACCAATTAGAAAAGACGAAAGCAGAAGTGTCCAGATATCAGGGCATTTTTGAGAAGTTTCAGGTTGAG AAGGATAACCTTCTATGGAGGGAAAAGGAACTGAATATGAAAAGTGATCTCCTTGATGTTTACCGAAGATCTTCTGCAGTTATGTCTTCAAGACTATCAG AGTTGGAGTCAGAGATAAATAAACATATTAATCAGCAGAATATGATTAAGGTTAAGTTGGAGGAGGCATCAAAAGAACCTGGGAGGAAAGAAGTTATTAC AGAATTTAAAGTATTAGTGTCTTCATTTGCTGATGATATGAGTACTATGCAACGCCAATTAAGTAGCTATAAAGAGGCTGCCTCAGATATTCATTCCTTG CGAGCTGATGTGCAGTGTCTATCAGAAGTGCTTGATAGAAAGACTATGCAGTCGACAAGTTTATCATTGAGGTCGAGGAATCAAGTTTCCGAGATGGATA AGTTGCAATCTTTGGTCAAAGATCTACAGGAAAGTGAAGCAGAATTGAAAGTGATCTCAGACATGTATAGGCGTGAGTCAACTGATTCAAGGGATTTGCT GGCGGCAAGAGATTCTGAGTACCATGCTTGGGTTCAAGTTCAAAGTTTAAAGTTATCCCTTGATGAGCAGAATTTGGAACTACGTGTTAAGACTGCAAAC GAAGCCGAGGCAATTTCACAGCAGAAGCTGGCTGCTGCAGAAGCTGAGATTGCTGATTCAAGAGAAAAATTGGAAGCTTCAAAAAGAGAAATATCGAAGC TTTCCGATGTCCTCAAATCCAAAAGTGAAGAAAATGAGGCATACTTATCTGAAATTGAGACTATTGGACAAGCATATGATGACATGCAAACTCAAAACCA ACATTTACTGCAGCAAGTCACTGAGCGAGATGACTATAATATCAAGCTTGTTCTAGAGGGTGTAAGAACTAGACAGCTGCATGACTCTTTGTTCACAGAC AAGTTATCCCTTCAAAAGGAAATTCAGCAAGCCAAAGTTTCTCTCGACTTCTACAAAGTTAAGGCTGCAAAAATTGAAGACCAGTTAAAAAGTAATTCAG ATCAGGTTCAGAAGATTGCTGCAGATAAATCTCAGAACTCGGTCACATTTGAGAATGTGCAGAAGAGACTGCATGATGCAAGGAGATCATATGGTCAAAC GAGGGAATTGCTTGACGTCTCACAATCTAAGGTTGAGGAAAGTCGAATGACACTTGCTGAGCTGCAAATAGACGTGGAAAAAGAGAGGTTTGAGAAGAGA AGAAAAGAGGAGGAGTTAGAAATTGCAAGAAGAAAGCTGTTATATCTTAGAGCTGAGTCAGAGGGTTCATCAATCTTAGAGAAGCTTCGGCAAGAACTTA GAGAATACAGAGAAATTGTGAAGTGTAGCGTCTGCCATGATAGGCCTAAGGAGGTTGTCATCACAAAATGCTATCACTTGTTCTGCAATCCTTGTGTTCA AAGAATAACGGAGACTCGCCACCGGAAATGTCCAGTGTGTGCTGCAAGTTTTGGACAAAATGATGTCAAGCCGGTATATATATGA
AA sequence Show only first row Show all	>Lus10042890 pacid=23181915 polypeptide=Lus10042890 locus=Lus10042890.g ID=Lus10042890.BGIv1.0 annot-version=v1.0 MESTGEPDRKRRHFSSLSPTAVMAKKQPLSHFSDDKKLDTAVLQFQNQKLLQKLEAQKVEYSILESKYSQLKERQQPYDSTLNAIDKSCKLLVNDLEARS KQLRESSSWNASQKALKGREDIAVVPEDAFLSRLMETGATESSSANNIPEQIDESRETGSGNVEVVQMEPERDAVTNKMKNILKNIVLAINDLWHVKDEF HAAVLKELPKDGACRQKSCTELVMEVKNFRSTLSDLHLKHKALSRDLQGSQDTDAKAKAQLMRLKGELETSVSKLHSTNCKITTLKAERDATKGTFFPVL NLGSKHDDGDKSEEKQKGLHEMESAVKELSEQASSRLVALKALHNDRIKMLEHLSDLQNSLKNINCISSSQIFLLARDQLEKTKAEVSRYQGIFEKFQVE KDNLLWREKELNMKSDLLDVYRRSSAVMSSRLSELESEINKHINQQNMIKVKLEEASKEPGRKEVITEFKVLVSSFADDMSTMQRQLSSYKEAASDIHSL RADVQCLSEVLDRKTMQSTSLSLRSRNQVSEMDKLQSLVKDLQESEAELKVISDMYRRESTDSRDLLAARDSEYHAWVQVQSLKLSLDEQNLELRVKTAN EAEAISQQKLAAAEAEIADSREKLEASKREISKLSDVLKSKSEENEAYLSEIETIGQAYDDMQTQNQHLLQQVTERDDYNIKLVLEGVRTRQLHDSLFTD KLSLQKEIQQAKVSLDFYKVKAAKIEDQLKSNSDQVQKIAADKSQNSVTFENVQKRLHDARRSYGQTRELLDVSQSKVEESRMTLAELQIDVEKERFEKR RKEEELEIARRKLLYLRAESEGSSILEKLRQELREYREIVKCSVCHDRPKEVVITKCYHLFCNPCVQRITETRHRKCPVCAASFGQNDVKPVYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	0	1
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	1.0	0.9492
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	3.2	0.9175
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	4.2	0.9239
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	4.7	0.9253
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	5.5	0.9112
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	6.5	0.9108
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	7.2	0.9185
AT3G06760			Drought-responsive family prot...		Lus10010305 [exp]	8.7	0.8983
AT3G03560			unknown protein		Lus10020297 [exp]	9.6	0.8880
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	12.2	0.8704

Compare expression of checked genes

Lus10042890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.