Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22060 484 / 2e-170 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 472 / 1e-165 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 139 / 3e-37 ATERDJ3B DNAJ heat shock family protein (.1) AT2G22360 129 / 4e-33 DNAJ heat shock family protein (.1) AT1G80030 129 / 8e-33 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 120 / 1e-29 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 119 / 3e-29 GFA2 gametophytic factor 2 (.1) AT1G28210 117 / 6e-29 ATJ1 DNAJ heat shock family protein (.1.2) AT3G17830 102 / 2e-23 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20550 93 / 5e-21 HSP40/DnaJ peptide-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028188 [exp] 723 / 0 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 432 / 1e-150 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 222 / 1e-69 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 219 / 2e-68 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 206 / 7e-63 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10032100 [exp] 139 / 4e-37 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 136 / 3e-36 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 135 / 1e-35 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 130 / 6e-34 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141100 [exp] 551 / 0 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 510 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 510 / 1e-180 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 488 / 3e-172 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 298 / 4e-99 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 145 / 1e-41 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.014G122600 [exp] 134 / 2e-35 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 133 / 2e-35 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 132 / 5e-34 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.007G094900 [exp] 124 / 2e-31 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042891 pacid=23182029 polypeptide=Lus10042891 locus=Lus10042891.g ID=Lus10042891.BGIv1.0 annot-version=v1.0 ATGTTTGGACGTGGAGGTCCGAGGAGGGGTAGTGACAATTCTAAGTACTATGACGTCCTTGGTGTCCCGAAGACTGCGAGTGCTGATGAACTGAAGAAGG CCTACAGAAAAGCTGCCATAAAAAATCATCCCGACAAGGGAGGAGATCCGGAGAAGTTCAAGGAATTATCCCAAGCTTATGATGTTCTGAGTGATCCTGA GAAAAGAGAAATCTATGATCAGTATGGTGAAGAGGGCATCAAGGAGGGGATGGGAGGAGGAGGCCATGGTGCCCATTCTCCTTTTGACATATTTGAATCA TTTTTTGGCGGTGGGGGTTTCGGAGGAGGTGGTAGTTCCAGAGGAAGAAGGCAGCGAAAAGGAGAGGATGTAGTGCATCCATTGAAAGTCTCCTTAGAGG ACTTGTACAATGGGACCACAAAGAAACTCTCACTGTCAAGGAATGTTCTTTGCTCCAAATGCAGAGGTAAGGGATCAAAAAGTGGAGCTTCTGGTACATG TTATGGATGTCAAGGGACAGGAATGAAAGTGACAACCCGGCAGATTGGACTAGGCATGATTCAGCAGATGCAGCAAGTCTGTCCCGATTGTAGAGGATCA GGCGAGGTAATCAGCGAGAAGGATAGATGTACACACTGCAAAGGGAAAAAGGTTGCACATCAAAAGAATGTGCTCGAGGTTCATGTCGAGAAGGGTATGC GCCATGAACAGAAAATAGTTTTTGAGGGTCAAGCTGATGAAGCTCCTGACATGGTTACCGGAGACATCGTCTTTGTGTTGCAACTGAAAGAGCATCCCAA GTTCAAACGAAAGTATGATGATCTAGAAATGGACCATACACTTAGTTTGGCGGAAGCTCTTTGTGGATTTCAATTTGCCCTCACTCATCTTGATGGAAGG CAGCTGCTAATCAAATCAGATCTCGGAGAGGTCATTAAACCTGGTCAGTGCAAGGCAATTAATGACGAGGGAATGCCGCAGCACGGCAGGCCCTTCATGA AGGGAAAGCTATATATAAGGTTCAAGGTGGAATTTTTGGAGTCTGGTACACTGTCGGAAGAGCAGTGTCGGAAGATAGAGAGAATACTGCCGCCGAAGTC ATCTGGGAAGAAGGAGCTGAGCAACATGGAGTTGGATGATTGCGAAGAGACTACTCTGCATGATGTGAACATGGCGGAGGAGGATCGGCGTAGGAAGCTG CATCAACATCAGCAACAGAGAGAGGCTTACGAGGAAGATGACGACCCATCGACTGAACGTGTCCAGTGTGCCCAACAGTAA
AA sequence Show only first row Show all	>Lus10042891 pacid=23182029 polypeptide=Lus10042891 locus=Lus10042891.g ID=Lus10042891.BGIv1.0 annot-version=v1.0 MFGRGGPRRGSDNSKYYDVLGVPKTASADELKKAYRKAAIKNHPDKGGDPEKFKELSQAYDVLSDPEKREIYDQYGEEGIKEGMGGGGHGAHSPFDIFES FFGGGGFGGGGSSRGRRQRKGEDVVHPLKVSLEDLYNGTTKKLSLSRNVLCSKCRGKGSKSGASGTCYGCQGTGMKVTTRQIGLGMIQQMQQVCPDCRGS GEVISEKDRCTHCKGKKVAHQKNVLEVHVEKGMRHEQKIVFEGQADEAPDMVTGDIVFVLQLKEHPKFKRKYDDLEMDHTLSLAEALCGFQFALTHLDGR QLLIKSDLGEVIKPGQCKAINDEGMPQHGRPFMKGKLYIRFKVEFLESGTLSEEQCRKIERILPPKSSGKKELSNMELDDCEETTLHDVNMAEEDRRRKL HQHQQQREAYEEDDDPSTERVQCAQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	0	1
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	3.0	0.9207
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	3.2	0.9413
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	4.5	0.9275
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	4.6	0.9111
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	6.5	0.9293
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	6.5	0.9362
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	8.4	0.9186
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	8.7	0.9063
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	10.2	0.9279
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	10.2	0.9147

Compare expression of checked genes

Lus10042891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.