Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19690 124 / 5e-37 PLA2-BETA phospholipase A2-beta (.1.2) AT4G29460 119 / 7e-35 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT4G29470 111 / 2e-31 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT2G06925 64 / 8e-14 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028189 [exp] 205 / 6e-69 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2) Lus10011960 [exp] 60 / 9e-12 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149700 [exp] 163 / 2e-52 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2) Potri.006G070400 [exp] 66 / 3e-14 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.018G132100 [exp] 66 / 3e-14 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 56 / 1e-10 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042892 pacid=23182025 polypeptide=Lus10042892 locus=Lus10042892.g ID=Lus10042892.BGIv1.0 annot-version=v1.0 ATGAGGTTTAATGGTCTGGCCGCGACATTCGCCTTCACGTTCCTCTTCCTCTTTTCCCTCGTCTCCTCCTCCGCCACCAATCTTGATGGCGCTCAGGCGA TTTGCAGCAGGACCTGTGTGGTGCAGAACTGTGATTCATTTGGGATACGTTACGGCAAGTATTGTGGGCTAGGATGGACCGGCTGCCCTGGGGAGAAGCC CTGCGACGATCTAGACGCATGCTGCAAGATTCACGATGATTGCGTTGGGAAGAAAGGTCTAACCAACATCAAGTGCCACGAAAAGTTCAAGAAGTGTGCG AAGAAAGTGCAAAATTCAGGGAAACTAGGATTCTCTAAGCAATGTAGGTATGAGAAAGCCATCCCCACTATGCTCAATGGTATAGATATGGGGATTTTAT TGAGCCAGTTTGGTGAAGCCAAACGTGAGCTCTGA
AA sequence Show only first row Show all	>Lus10042892 pacid=23182025 polypeptide=Lus10042892 locus=Lus10042892.g ID=Lus10042892.BGIv1.0 annot-version=v1.0 MRFNGLAATFAFTFLFLFSLVSSSATNLDGAQAICSRTCVVQNCDSFGIRYGKYCGLGWTGCPGEKPCDDLDACCKIHDDCVGKKGLTNIKCHEKFKKCA KKVQNSGKLGFSKQCRYEKAIPTMLNGIDMGILLSQFGEAKREL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29460		PLA2-GAMMA	phospholipase A2 gamma, Phosph...		Lus10042892 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	15.6	0.8607
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	22.7	0.8450
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	27.5	0.8384
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10006399 [exp]	30.4	0.8344
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10002151 [exp]	34.7	0.8210
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	44.7	0.8104
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	59.4	0.7691
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	59.6	0.7422
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	69.3	0.8080
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	84.6	0.8008

Compare expression of checked genes

Lus10042892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.