Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00026 266 / 8e-89 SD3 SEGREGATION DISTORTION 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028190 [exp] 440 / 3e-155 AT4G00026 275 / 5e-91 SEGREGATION DISTORTION 3, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140700 [exp] 305 / 1e-103 AT4G00026 291 / 7e-99 SEGREGATION DISTORTION 3, unknown protein Potri.014G054400 [exp] 296 / 3e-100 AT4G00026 287 / 5e-97 SEGREGATION DISTORTION 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0455 [flax] [poplar] MIM-OM_import PF08294 [flax] [poplar] TIM21 TIM21
Representative CDS sequence Show only first row Show all	>Lus10042893 pacid=23181785 polypeptide=Lus10042893 locus=Lus10042893.g ID=Lus10042893.BGIv1.0 annot-version=v1.0 ATGCAAGGCTTGAGGAGGAAATCTGCTCTTCTCTTGAGATCTCCGACTGGGTTGTCTTCTCTTCTTGCTTCAAACCCTCATGCAAACTTCGTTACTGCTG CAGGGAAAGCTGCAATATCTGGGGCAGGATCCAAGTCTAGGGGGTTTCTGACTCATTTCAGTGCTCGTGGTGGTGCCACTCGGCAACTTTCGACAGGACT CCTTGTTTTCCGCAATGGATGGAACTGTGGACAATCCGTAGCAGGATTTAGAACACGGGGCCAACTTCTACAGAGCGATTCGAAAAAACAAAGCCTTAAT CAATTATTTTCCAGATCCTTCGCATCAAGACCGCCCAGGAAACCTGAGCAGATCCGCTCTGAGCAGACAAAAAAAGATGTGTCCACTGTTGAGGATCCTT TTGATGCTCCCACTTACAATATCCCAGAGAAGCCTGTCTCGTTTACAGAGGGTGCTTCCTATACTTTGGTAATCCTAGTTGGTCTTGGATTAGCAGCTGC TGCAGGTTATGCTGTTTTCAAGGAACTGATATTTGAACCAAAGGAGTACAAGATCTTTAACATGGCACTGAAAAGAATTCAAGACGACAGTCAGGTACGG GTGAGGATTGGATCTCCCATAACAGGTTATGGTCAGGAAAGTAGAAACCGTGCTGCCCGCCAAAGAATTCCAAACAAGATTTACACTGACGAAGATGGAG TTGAGCATGTCCTTGTCAGCTTTCATATCCGTGGGCCGCATGGAGCTGGTAAGGTATCAGCGGAGATGTTCAGAGATAAAGTGGACAAGCAGTGGAAGTA TACATACTTGATTGTTCAGATCACACATCCTTCACAATCTCAACTGATTCTGGAGTCTTACATACCGGCGGCACCTGCATCAGTTCCAGCACTGGGACGG TAA
AA sequence Show only first row Show all	>Lus10042893 pacid=23181785 polypeptide=Lus10042893 locus=Lus10042893.g ID=Lus10042893.BGIv1.0 annot-version=v1.0 MQGLRRKSALLLRSPTGLSSLLASNPHANFVTAAGKAAISGAGSKSRGFLTHFSARGGATRQLSTGLLVFRNGWNCGQSVAGFRTRGQLLQSDSKKQSLN QLFSRSFASRPPRKPEQIRSEQTKKDVSTVEDPFDAPTYNIPEKPVSFTEGASYTLVILVGLGLAAAAGYAVFKELIFEPKEYKIFNMALKRIQDDSQVR VRIGSPITGYGQESRNRAARQRIPNKIYTDEDGVEHVLVSFHIRGPHGAGKVSAEMFRDKVDKQWKYTYLIVQITHPSQSQLILESYIPAAPASVPALGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10042893 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	9.8	0.8448
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	28.9	0.8306
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	36.5	0.8270
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	48.9	0.8202
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	51.0	0.7808
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	53.6	0.8216
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	65.9	0.7574
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	77.2	0.7842
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10010424 [exp]	77.8	0.8024
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	82.5	0.7899

Compare expression of checked genes

Lus10042893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.