Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17470 321 / 1e-102 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) AT3G14050 98 / 3e-21 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT1G54130 95 / 4e-20 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT4G02260 73 / 3e-13 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT2G43290 44 / 0.0001 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 42 / 0.0003 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028191 [exp] 481 / 1e-164 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10022102 [exp] 102 / 1e-22 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 98 / 4e-21 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 94 / 1e-19 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 92 / 4e-19 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10002139 [exp] 67 / 2e-11 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 66 / 5e-11 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10009176 [exp] 41 / 0.0006 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002400 [exp] 339 / 1e-109 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Potri.001G168200 [exp] 95 / 3e-20 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 92 / 2e-19 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 77 / 1e-14 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 72 / 4e-13 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042894 pacid=23181873 polypeptide=Lus10042894 locus=Lus10042894.g ID=Lus10042894.BGIv1.0 annot-version=v1.0 ATGGGTATACTACCAAACCGGTCCAAAATCCCCAAAACCCCCCCGTTGCCGCCGGTCGGTGATGATTGTCTCTTTTTCAGAAGTCCGTTAGCAAGTATAA AAAATACAAAAGGAAGTTTAAATAGGGAAAATGAAAATGGAAAGAACATAAAATACAACTTCTTTTCATTTATTCTTCGTCGGAGAACGAGGGCCGATCG AGGTACCTCGACCACGTTTTCAGCTCCGGCGGAGAATCGCTGTTCTGTTCTGCTGATGGCGATGGAGTTGTGTGGTCTGCGTCACTTATCCTCTCATAGC ATCCCAACCATACCTTCTTCGCATCCAACTTCTTCAATCTTCTCCCTGAAAGGCATGATGACGTCGATGAGCAGGAGTAGTAACCGTTCATCTCGGCGAA AGACAGCAGCGAACCATCCCTTGGAGCAGCCTGGTGGGAAGATGGTGGTGGAGCTCGTGGGAGCTTTCAATTCTCTGACGCAGAGGATGAATGTGCTGTC TACCAGCTCCTCTCGCTTGCTCTTCACCACCCTCAAGCTCTCTATCCCCATTTTACAGAACTTGGGCCTCGCTCCAGATGGAAGACCTCCTCTCGCCAAA GCCTTGTCTCTCGCTCTCCTCCTCGCCGATCTTCAGATGGATGCAGAAGTTCTTTCTGCTAGCATATTGTGGCATGTGCTTGAGGCAAATGCCATATCTC TAAAGGAGGTGAGAAGCCGGGTCGGCCCTGCTACTGCACATCTTCTCCATGAAACCTGGCGCCTTAAAACACTTCCTACCAGATTGGATGTGTTAGATGA TGATGATGATGCTGCTGCTTCTATGTTGCGACGCTTTTGCCTTACTTATTATGACATCCGTGCTCTTGTTCTGGACCTGGCCATGAGAGTGGAAGCCGGT CGCTACAAAAGTCGGTATAGCACTATGAAGAAGCTGCTCAAGGATGGTCGAAAGCCGGAACAAGTAAATGATGTTCTGGGGCTAAGAGTCATCTTGCACC CTAAAGAAGACATGTGTGAGAAGGCATGCTACAGAACACAAGAAATAATTCGTTCGTTATGGAAGGATATACCAGATAGAACAAAAGACTACATTGCCAA GCCAAAAGCTAATGGTTATCAAAGCTTGCACATGGCTGTTGATGTGAGTGACGACAACGATGCCAGACCAATGATGGAAATACAAATACGCACTGTAGAT ATGGATAGGAAGGCAGTTGGTGGAGCAGCCTCACATTCCTTGTATAAAGCCGGTCTTACTGATGCACAAGAGGCAAAGCGGCTCAAGACAATAATGATGG CTGCAGCTGAATTTGCAGCACTACGTCTCAAGGATCTTCCATCTGCTGCTAAAGGCATTGAGATTGAGGGGAGAGACAGAGTGTTTGGGCTTCTGGACAA GAATGGAGATGGACGGATCAGCATAGAGGAATTAATGGAAGTGATGGAAGAGCTTGGTGCCCCGGGGAAGGATGCAGAGGAGATGATGCAACTGCTAGAT TCCAATAGTGATGGCTCTCTAAACTCTGATGAATTTGATTCATTCCAGAAGCAGGTTGAACTTATACGTGATCTGGAGCAGAAAGATGATAGCTACAAGA GCAAGTTAAAGCAGAAACTTGAGGCTGCAGAAGAGAATGGTTTGATTCAGGTTTATAGTAAAGAACTCGGGAATAGACTAGCCAGCTGA
AA sequence Show only first row Show all	>Lus10042894 pacid=23181873 polypeptide=Lus10042894 locus=Lus10042894.g ID=Lus10042894.BGIv1.0 annot-version=v1.0 MGILPNRSKIPKTPPLPPVGDDCLFFRSPLASIKNTKGSLNRENENGKNIKYNFFSFILRRRTRADRGTSTTFSAPAENRCSVLLMAMELCGLRHLSSHS IPTIPSSHPTSSIFSLKGMMTSMSRSSNRSSRRKTAANHPLEQPGGKMVVELVGAFNSLTQRMNVLSTSSSRLLFTTLKLSIPILQNLGLAPDGRPPLAK ALSLALLLADLQMDAEVLSASILWHVLEANAISLKEVRSRVGPATAHLLHETWRLKTLPTRLDVLDDDDDAAASMLRRFCLTYYDIRALVLDLAMRVEAG RYKSRYSTMKKLLKDGRKPEQVNDVLGLRVILHPKEDMCEKACYRTQEIIRSLWKDIPDRTKDYIAKPKANGYQSLHMAVDVSDDNDARPMMEIQIRTVD MDRKAVGGAASHSLYKAGLTDAQEAKRLKTIMMAAAEFAALRLKDLPSAAKGIEIEGRDRVFGLLDKNGDGRISIEELMEVMEELGAPGKDAEEMMQLLD SNSDGSLNSDEFDSFQKQVELIRDLEQKDDSYKSKLKQKLEAAEENGLIQVYSKELGNRLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	0	1
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	1.4	0.8918
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	2.6	0.8847
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	3.0	0.8896
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	3.5	0.9006
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	5.8	0.8607
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10009888 [exp]	7.3	0.8590
AT1G66330			senescence-associated family p...		Lus10004049 [exp]	8.8	0.8724
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	10.0	0.8559
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	10.4	0.8696
AT2G38780			unknown protein		Lus10019776 [exp]	10.8	0.8761

Compare expression of checked genes

Lus10042894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.