Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01710 224 / 5e-76 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) AT5G65274 218 / 3e-73 ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028192 [exp] 260 / 5e-90 AT4G01710 236 / 5e-82 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10027941 [exp] 110 / 7e-32 AT4G01710 89 / 1e-24 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10012040 [exp] 114 / 2e-31 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10030119 [exp] 69 / 4e-14 ND / Lus10037707 [exp] 41 / 0.0003 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136500 [exp] 222 / 4e-75 AT4G01710 224 / 4e-77 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Potri.014G045200 [exp] 207 / 5e-69 AT4G01710 208 / 9e-71 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04699 [flax] [poplar] P16-Arc ARP2/3 complex 16 kDa subunit (p16-Arc)
Representative CDS sequence Show only first row Show all	>Lus10042895 pacid=23182003 polypeptide=Lus10042895 locus=Lus10042895.g ID=Lus10042895.BGIv1.0 annot-version=v1.0 ATGGCCGGTGCTGACGGATTTGTGGAAGCAGAGAACGCCGAGGCAATCATTACCAGAATCGAACAGAAGTCTCGCAAGATTGAGAGCTTACTCAAACAGT ACAAGCCAGTGGAAGCGCTCAAGACGGCGCTTGAAGGATCGCCTCCAAAGACCGGCGATGAGCGATGCAAGGTCCGTTTCCCTCCCTTTTTCTGTTCCTC GTCTGCCAATTGGATAGTGGTTCATAGAGCGATTATGGCAATCAAAGACGTGGACGGGATGCTGACCTCATTGGACCCTGAGTATTACGATATCCTCATG AAGTATGTATACAGAGGGTTGTCTACAGGAGATCGGCCAACATGTGATCAGTGCCTGCGGATACACGAGAAATTGACAGAGAAGGCTGGACTGGGTTGCA TTTTGCGCTCTCTTTCCGACACTGGTCTTTCTAAGATGAAACTGTGTCTTCTTGTTGCTCAATTTCTTGGTCTCATCCCTCAAATCAAGGTGTTTCAAGC CATAGCTTCTTGGCTCTGGGAAAGGGATGGGCATGTTTGTGTCTTAAAAACTTCCTCCTGGTTATTTTTAATTCCATTCCCCTCGGCTCAGGTCAACTCC TGA
AA sequence Show only first row Show all	>Lus10042895 pacid=23182003 polypeptide=Lus10042895 locus=Lus10042895.g ID=Lus10042895.BGIv1.0 annot-version=v1.0 MAGADGFVEAENAEAIITRIEQKSRKIESLLKQYKPVEALKTALEGSPPKTGDERCKVRFPPFFCSSSANWIVVHRAIMAIKDVDGMLTSLDPEYYDILM KYVYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRSLSDTGLSKMKLCLLVAQFLGLIPQIKVFQAIASWLWERDGHVCVLKTSSWLFLIPFPSAQVNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	2.0	0.9344
					Lus10022017 [exp]	4.7	0.9290
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	5.7	0.9148
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	5.8	0.8976
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	8.0	0.9094
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	9.9	0.9079
AT1G30140			unknown protein		Lus10024751 [exp]	10.7	0.9208
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10023134 [exp]	10.9	0.8515
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	11.0	0.9134
AT1G07650			Leucine-rich repeat transmembr...		Lus10010950 [exp]	11.5	0.8953

Compare expression of checked genes

Lus10042895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.