Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60380 89 / 5e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028193 [exp] 874 / 0 AT3G60380 112 / 2e-25 unknown protein Lus10017303 [exp] 76 / 4e-16 ND / Lus10033071 [exp] 77 / 1e-14 ND 39 / 0.005 Lus10033089 [exp] 73 / 5e-13 ND / Lus10017075 [exp] 63 / 1e-11 ND / Lus10006097 [exp] 61 / 3e-10 AT4G29090 43 / 8e-05 Ribonuclease H-like superfamily protein (.1) Lus10041736 [exp] 47 / 9e-06 ND 37 / 0.006 Lus10010557 [exp] 45 / 7e-05 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10019746 [exp] 44 / 0.0001 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045300 [exp] 242 / 1e-69 AT3G60380 89 / 3e-18 unknown protein Potri.002G136600 [exp] 194 / 4e-53 AT3G60380 86 / 5e-17 unknown protein Potri.001G155000 [exp] 67 / 3e-11 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G079900 [exp] 64 / 2e-10 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042896 pacid=23182020 polypeptide=Lus10042896 locus=Lus10042896.g ID=Lus10042896.BGIv1.0 annot-version=v1.0 ATGGCGGATTCGGTCCATTCAACCCCGTTAGCCTCAGCCACCGCCGGTCAATCTAAGTCCGTCACGGCGAACCTTCCATCATCACGAACCTTCCATCATC ATCCGCCGCTTACTATTCTCCTCTTCTCTAGCTTCCTCAAAAACCTCTGGGAGCTTTCCCAACTTCTATTCATCGGCCTTGCTGTGTCGTATGGACTATT TAGTCGTAGGAATGCCGAAACGGATGATCACTTTGCGGCCGATAATGGTTCCCAATTTACTGTTGACGAGTGCCAGTCGTCGTTTGTGTCTAGAATATTC CCGGGCTTGCCCCCTTTTGAAGATAGCTACGAGGTTCCTTCTGAATGCGAGGATAAAACGGCTGTTTCCCATGTTCAGCTGTCAGCGGCTAGTTACAGTT ATACGGTTCCTGACCCGGTCGCCTATGATGGTTATGGGAACCACCAATCTGTTTCTGTGAAAAATGGTTTCGAGATTCCTAATCACTCTGGCGGGGATGA GGTGATGCAGGCTTGGAATGCTCAGTATTTTCAAGGTCAATCAACTGCTGTTGTGTCTAAACCTAATCTGGATGTTTTGGGTCAATGTGAAATGAACAAC GTTCAGAAACCCTTAGGTTTGCCTGTTAGAAGTCTGAATTCAAGTGGTACAGACGTCAATATGCCTGATTTCAGTAATATTAACATCAGTAAGGCTGCTG CTAAGAGCAAAGAGAATGATGGCGGTGCATATGGGTCTGGTGAGGAATTCTTTGGAGATGTAAATCCTGTGAATTTAGAAGAGAAGTTTAATCAAACTGT TGATTATTCAGACTTTTCATGGCGTTCGACATCTGCTAGAGAAGAGACAGGAGTAGTAGCTGCTGTTGATCGTTCTGGTCATTTTCGACCTCACTCCATT GATGAAACTCAGTTTGAGTCTCTCAAGTCAGAGTCATTTTTTGGTTCCTCCAACACTACTTCTGATGATCGTTCTGGGCATTTTCGACCTCTCTCAGTTG ATGAAACTCAATTCGAGTCTCTCAAGTCAGAGTCATTTCTTGGCTCCTCCAACACTACTTCTGTTGATCGTTCTGGTCATTTTCGACCTCTCTCAGCTGA TGAAACTCAACTCGAGTCTCTCAAGTCGGAGTCATTTTTTGGCTCCTACAAACCACCCATCTCTTCTGAGGATGGTGCGATGCAACATTCGGCAACCACT CAGCATCATACCAAGTCGAACTCACTTCCTTCCGAGTTTCCCAACTCACATATGAATGAATCAGGTGACGATAAGACTTCCCATGCGTCTAATACTCCTG TTACTGCTAGAGGTTCCCGAATGAATGAATTCCCTTTAAGGAAGTATAGTGGTTGTGGCTCCTTGTTCAAAAAGGAATCACATGAAAATTCGAGAGGTGT GTTGAAAGAAAAGGATTTGGATAGCTCTAGGAATCCGTTGAAAGGTTTGAGTGAGAATAAGGGAAATGAGGAGGATTCGGAGAAGAAGAACAAGAAGAGC CAATTGTCGCTGAAATTGGATAAGAAAGCTGAGAATGAATTGCTGGCTAAGCCTTCAAGAAGGGGGAAATCTGTGAGGACAGTTAGATCACCTGGTGGCT CTAGTACTACTGAGGTGAAAAGGGATGCTGCTGTGGCCATGGTTCACAGCTACTTCGACGATGTAGTTGGGAAAGCATTTGATGAGATTGAGGACACCAT GACCGAGGATTATGACTCGTTTCCTCTTCCAAGTGCAGCGACGTGTATCATCTCGGTGGATGTTGCAGTCCGCATCCTTTCTGGCATTGGCTCTGTTGAT TTTTTCGTTCATTGTCACTGCGGTTCCTTAGTCTATGGGACAGGTCATGTCATCCATCATATTGTGGATCCACTAACTTTGGAGTTTTTAGCCATTCAAG CACTCTTCGTCTCCTGTGTTTGCTACCTCGAGTCCTATCAGATCCTCTCAGACTCAACAGAGGTTGTGCGGCTCATTTACTCTGTTGCGCCTGATATTCG TGTTGGTTCATTCCTTACCTTTAGTTATGGTGTTTCATATCTCCCTCCTGGATAG
AA sequence Show only first row Show all	>Lus10042896 pacid=23182020 polypeptide=Lus10042896 locus=Lus10042896.g ID=Lus10042896.BGIv1.0 annot-version=v1.0 MADSVHSTPLASATAGQSKSVTANLPSSRTFHHHPPLTILLFSSFLKNLWELSQLLFIGLAVSYGLFSRRNAETDDHFAADNGSQFTVDECQSSFVSRIF PGLPPFEDSYEVPSECEDKTAVSHVQLSAASYSYTVPDPVAYDGYGNHQSVSVKNGFEIPNHSGGDEVMQAWNAQYFQGQSTAVVSKPNLDVLGQCEMNN VQKPLGLPVRSLNSSGTDVNMPDFSNINISKAAAKSKENDGGAYGSGEEFFGDVNPVNLEEKFNQTVDYSDFSWRSTSAREETGVVAAVDRSGHFRPHSI DETQFESLKSESFFGSSNTTSDDRSGHFRPLSVDETQFESLKSESFLGSSNTTSVDRSGHFRPLSADETQLESLKSESFFGSYKPPISSEDGAMQHSATT QHHTKSNSLPSEFPNSHMNESGDDKTSHASNTPVTARGSRMNEFPLRKYSGCGSLFKKESHENSRGVLKEKDLDSSRNPLKGLSENKGNEEDSEKKNKKS QLSLKLDKKAENELLAKPSRRGKSVRTVRSPGGSSTTEVKRDAAVAMVHSYFDDVVGKAFDEIEDTMTEDYDSFPLPSAATCIISVDVAVRILSGIGSVD FFVHCHCGSLVYGTGHVIHHIVDPLTLEFLAIQALFVSCVCYLESYQILSDSTEVVRLIYSVAPDIRVGSFLTFSYGVSYLPPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60380			unknown protein		Lus10042896 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	16.9	0.7585
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	20.0	0.7440
AT5G47940			unknown protein		Lus10016406 [exp]	29.7	0.7231
AT4G21570			Protein of unknown function (D...		Lus10011236 [exp]	35.3	0.6239
AT1G11270			F-box and associated interacti...		Lus10013934 [exp]	41.5	0.6934
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	41.7	0.6987
AT5G47940			unknown protein		Lus10016408 [exp]	58.3	0.6760
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	64.5	0.6789
AT3G50790			esterase/lipase/thioesterase f...		Lus10017327 [exp]	65.8	0.5891
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10000398 [exp]	91.4	0.6236

Compare expression of checked genes

Lus10042896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.