Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60370 313 / 6e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 77 / 6e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 73 / 2e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 61 / 2e-11 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G05420 59 / 4e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 61 / 6e-11 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT4G19830 59 / 1e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G39710 56 / 2e-09 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT4G26555 56 / 2e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 53 / 3e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028194 [exp] 437 / 3e-157 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10008359 [exp] 75 / 4e-16 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027115 [exp] 74 / 1e-15 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 68 / 7e-14 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10009828 [exp] 69 / 8e-14 AT5G13410 314 / 1e-108 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040937 [exp] 68 / 2e-13 AT5G13410 317 / 1e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024735 [exp] 63 / 2e-12 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10031700 [exp] 65 / 6e-12 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10031121 [exp] 65 / 6e-12 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045600 [exp] 332 / 2e-116 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G136800 [exp] 100 / 1e-27 AT3G60370 95 / 5e-26 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G068300 [exp] 80 / 5e-18 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 75 / 3e-16 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 73 / 2e-15 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 64 / 3e-12 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.012G129200 [exp] 64 / 1e-11 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 63 / 2e-11 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 61 / 9e-11 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G012600 [exp] 57 / 6e-10 AT3G60370 49 / 4e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10042897 pacid=23181956 polypeptide=Lus10042897 locus=Lus10042897.g ID=Lus10042897.BGIv1.0 annot-version=v1.0 ATGTCTTCTGGTTCGAAGAAGAAGCATATGTTGTTCAGCTGCTCTAACCACTTAGAAGTAAGGCGTCGAACTTTTCTGGTCGTCCCAGCAACAGCATCAA CTTTCATCTTTTTCCAAACATTCCCATCTTTTGGGAAGACGAAAAGCAAGAGCCCATATGACGAAAGACGGCTGCTTGAACAGAACAAACGGGTACAGAG GGAGAACAATGCGCCTGAAGAATTCCCTAATTTTGTTAGGGAAGGGTTTGAGGTTAAGGTGGTGGCATCAGACAAGTATGTGAAGACTGAATCTGGACTT ATATACAAGGACTTCCAAGTTGGTCAAGGCCAATGCCCAAAAGCTGGTCAGCAGGTGACGTTCCATTACATTGGGTACAATGAGTCGGGGAGGCGCATCG ACAGTACCTACTTGCAGGGCTCCCCTGCCAAAATCCGCCTCGGCACTAATGGCTTAGTTCCCGGATTTGAGGAAGGGATCAGTGATATGAGACCTGGTGG AAAGAGAAGGATTATCATTCCGCCAGAACTTGGACCCCCTGTTGGGCCTTCTACATTTTTCAGCGCCAAGCAGTTTGAAGTGTTTGATGTGGAGCTTCTC AGCATTCAAGACTGTACGAGGAGGACTATTGTCGGCTTTTACTCTGATGTTGTTTGTAATTGA
AA sequence Show only first row Show all	>Lus10042897 pacid=23181956 polypeptide=Lus10042897 locus=Lus10042897.g ID=Lus10042897.BGIv1.0 annot-version=v1.0 MSSGSKKKHMLFSCSNHLEVRRRTFLVVPATASTFIFFQTFPSFGKTKSKSPYDERRLLEQNKRVQRENNAPEEFPNFVREGFEVKVVASDKYVKTESGL IYKDFQVGQGQCPKAGQQVTFHYIGYNESGRRIDSTYLQGSPAKIRLGTNGLVPGFEEGISDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELL SIQDCTRRTIVGFYSDVVCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	0	1
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	1.0	0.9878
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	2.0	0.9830
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	2.8	0.9764
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	3.0	0.9790
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	3.5	0.9665
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	4.7	0.9689
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	4.9	0.9720
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	5.2	0.9712
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	5.4	0.9565
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	5.9	0.9721

Compare expression of checked genes

Lus10042897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.