Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 1202 / 0 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 1066 / 0 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT2G14635 59 / 4e-11 unknown protein AT2G23140 66 / 6e-11 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G46510 66 / 1e-10 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G21410 61 / 1e-09 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 59 / 4e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G42340 60 / 5e-09 PUB15 Plant U-Box 15 (.1) AT3G47820 60 / 5e-09 PUB39 PLANT U-BOX 39 (.1) AT1G23030 57 / 7e-08 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028197 [exp] 1259 / 0 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028198 [exp] 136 / 7e-37 AT2G44900 243 / 4e-76 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10019308 [exp] 73 / 1e-12 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 72 / 1e-12 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 62 / 1e-09 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10024899 [exp] 62 / 1e-09 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 62 / 2e-09 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040834 [exp] 62 / 2e-09 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 61 / 3e-09 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137100 [exp] 1219 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.014G046000 [exp] 1215 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G079300 [exp] 991 / 0 AT2G44900 1056 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.009G165900 [exp] 80 / 3e-15 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.005G144700 [exp] 74 / 2e-13 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 72 / 1e-12 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G009900 [exp] 69 / 1e-11 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 66 / 7e-11 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 63 / 6e-10 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G225400 [exp] 61 / 5e-09 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10042900 pacid=23181656 polypeptide=Lus10042900 locus=Lus10042900.g ID=Lus10042900.BGIv1.0 annot-version=v1.0 ATGCGTCGTAGGGTGCGACGGAAAGTGGGGAAGAAGGGCAAAGAAAAGGTAGTTTTCCCTTGTTATCCAGAGATTGAAGAAGAAGATGTGAAGAACTCCC AAGTTGTTGTTGATTGGACAGGCTTGCCTGATGACACAGCAATTCAACTGTTTTCCTGTTTGAATTACCGTGACAGAGCAAGTCTTTCCTCAACTTGTCG GACTTGGAGGGTTTTAGGCGCTTCTCCATGCTTGTGGAGTTCTTTGGATCTGCGAGCTCATAAATGTGACTCTGCCATGGCAGCATCCGTTGCTTCTAGA TGTGAAAATCTTAAGAAGCTTAGGTTTCGAGGTGTGGAAACTGCTGATGCTATAATACATCTCCAGGCTAGGAATTTGAGAGAAATAAGTGGTGATTACT GTAGGAAAGTAACTGATGCAACTCTTTCTGTAATTGTGGCTCGCCATGAGGCACTTGAAAGCCTCCAACTTGGACCAGACTTCTGTGAGAGGATTAGTAG TGATGCCATAAGGGCAATAGCTTTTTGCTGTCCTAAATTGAAGAAACTCCGACTCTCTGGTATTAGAGATGTTTCTGCTGATGCAATCAATGCTTTGGCT AAGCACTGTCCCGAATTGTCCGACCTTGGCTTTCTGGACTGTCTTGTGGTTGATGAAGCCGCAATTAGGAATGTAGAATCCATTCGTTTTCTGTCAGTTG CTGGGACATCAAATATGAAATGGGCTGTGGTTTCTCATCTCTGGACCAAGCTGCCTAAACTGATTGGTTTAGATGTTTCAAGAACGGATATTAGTCCGGC TGCTGTTTCAAGATTATTATCATCATCTCAGAGCTTGAAAGTCATGTGTGCTTTAAATTGTTCAGCTCTTGAAGAAGACACCAGTTTTAGCGCGGATAGA CATAAAGGCAAATTGTTACTTGCCCACTTCACTGACATCTTTAAGGGGGTATCTTCATTATTTGCTGACAACACAACGAAACTGAAAAATGTATTCGTAG ATTGGAAGGATGTGGACAAGAAAGACAAAAACTTGGAAGATGTAATGACTTGGCTGGAGTGGATCCTTTCTCATACACTTTTGCGCACTGCTGAAAGCAA TCCACTAGGTTTGGATAGTTTCTGGCTCAAGCAAGGTGCAGCTATATTCCTAAGGTTGATGCAAAGTTCACAGGAAGATGTTCAAGAACGATCAGCCACA GGACTAGCTACTTTTGTTGTCATTGATGACGAAAATGCCAGCATAGATTGTGGAAGGGCTGAGGCAGTTATGCAAGATGGTGGTATACGTCTACTTCTGG ACCTTGCCAAATCTTGGCGGGAAGGTCTTCAGTCAGAGGCTGCTAAGGCTATAGCAAACTTGTCAGTCAATGCAAATGTTGCTAAGGCTGTTGCTGAAGA AGGTGGGATTGAAATCCTAGCAGGCTTGGCAAGGTCCTTGAACAAGCTTGTTGCGGAGGAAGCTGCAGGTGGACTTTGGAATCTTTCAGTTGGAGAGGAG CACAAGGTTGAGGGTGCTATTGCTGAGGCTGGTGGAGTTAAAGCTTTAGTTGATCTTATATTCAAGTGGTCATCTGGTGGAGATGGAGTTTTGGAACGTG CAGCTGGTGCTTTGGCCAATTTGGCAGCTGATGACAAGTGTAGCATGGAGGTTGCACTTGCAGGTGGTGTTCATGCATTGGTGATGCTCGCCCGCAGTTG CAAGTTTGAAGGTGTCCAAGAGCAGGCTGCTCGTGCGTTAGCTAATCTGGCTGCTCATGGAGATAGCAACACTAATAATGCTGCGGTTGGTCAAGAGGCA GGCGCCCTTGAGGCACTTGTTCAACTCACTCGCTCTCCTCATGAAGGTGTCAGGCAGGAAGCTGCTGGTGCATTGTGGAACTTATCCTTTGACGATAGAA ATCGAGAAGCCATTGCAGCTGCTGGTGGCGTTGAGGCACTGGTTGCTCTTGCACAATCCTGTTCAAATGCCTCGCCTGGTCTTCAAGAAAGGGCAGCTGG AGCACTCTGGGGGTTGTCTGTATCGGAAGTCAATAGCATTGCTATTGGACGAGAAGGAGGTGTTGCACCTTTAATTGCCCTGGCGCGCTCTGATGCCGAG GATGTTCATGAAACTGCTGCTGGAGCTCTTTGGAATCTTGCTTTTACCCCTGGTAATGCTCTTCGGATAGTGGAGGAAGGGGGTGTACCGGCACTAGTTC ACCTTTGTTCGACATCTATATCAAAGATGGCGCGCTTTATGGCTGCTTTGGCATTGGCATACATGTTTGATGGGAGGATGGATGAGTTTGCATTAGTAGG AAGTGCTTCGGAGGGCATTTCAAACTCTGGAGCTGAAATCGGAAGATTTGTTACTATGTTACGAAATCCATCTTCTATTCTTAAAGCCTGTGCTGCATTT GCTCTTCTCCAGTTCACTATTCCCGGTGGTCGGCATGCAATGCATCACGCAAGCTTGATGCAAAACACAGGGGCTGCAAGAGTGCTGCGTGCTGCAGCAG CCGCAGCAACTGCACCCTTGGAAGCCAAAATATTTGCCAGAATCGTGCTCCGGAATCTTGAACACCATCAAACCGAACTTTAA
AA sequence Show only first row Show all	>Lus10042900 pacid=23181656 polypeptide=Lus10042900 locus=Lus10042900.g ID=Lus10042900.BGIv1.0 annot-version=v1.0 MRRRVRRKVGKKGKEKVVFPCYPEIEEEDVKNSQVVVDWTGLPDDTAIQLFSCLNYRDRASLSSTCRTWRVLGASPCLWSSLDLRAHKCDSAMAASVASR CENLKKLRFRGVETADAIIHLQARNLREISGDYCRKVTDATLSVIVARHEALESLQLGPDFCERISSDAIRAIAFCCPKLKKLRLSGIRDVSADAINALA KHCPELSDLGFLDCLVVDEAAIRNVESIRFLSVAGTSNMKWAVVSHLWTKLPKLIGLDVSRTDISPAAVSRLLSSSQSLKVMCALNCSALEEDTSFSADR HKGKLLLAHFTDIFKGVSSLFADNTTKLKNVFVDWKDVDKKDKNLEDVMTWLEWILSHTLLRTAESNPLGLDSFWLKQGAAIFLRLMQSSQEDVQERSAT GLATFVVIDDENASIDCGRAEAVMQDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSLNKLVAEEAAGGLWNLSVGEE HKVEGAIAEAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEA GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCSNASPGLQERAAGALWGLSVSEVNSIAIGREGGVAPLIALARSDAE DVHETAAGALWNLAFTPGNALRIVEEGGVPALVHLCSTSISKMARFMAALALAYMFDGRMDEFALVGSASEGISNSGAEIGRFVTMLRNPSSILKACAAF ALLQFTIPGGRHAMHHASLMQNTGAARVLRAAAAAATAPLEAKIFARIVLRNLEHHQTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	3.7	0.8735
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	3.7	0.8766
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	5.0	0.8592
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	6.0	0.8436
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	7.5	0.8566
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	10.4	0.8672
					Lus10021411 [exp]	14.9	0.8428
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	16.5	0.8618
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	17.1	0.8575
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	18.3	0.7797

Compare expression of checked genes

Lus10042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.