Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 474 / 1e-165 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 239 / 1e-71 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G36180 106 / 2e-24 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G36160 106 / 3e-24 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028196 [exp] 578 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017534 [exp] 557 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 549 / 0 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 495 / 2e-173 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028199 [exp] 317 / 2e-108 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 241 / 2e-72 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10022078 [exp] 206 / 1e-63 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10024748 [exp] 105 / 5e-24 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 102 / 8e-23 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146300 [exp] 525 / 0 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 517 / 0 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 245 / 6e-74 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.005G169100 [exp] 107 / 1e-24 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 106 / 3e-24 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042901 pacid=23181674 polypeptide=Lus10042901 locus=Lus10042901.g ID=Lus10042901.BGIv1.0 annot-version=v1.0 ATGGAGGCCACTTTGCCCGCTTGCAAATCGGGTACCTCCGTTCCTGGTTTACTTTTGAGAACAACACCAGGAATAAGAAGTTCACAATGTAGCTTTTTGG TGGGAACTAAGGTCAATTTTCCCAGACAGAGAGCTCATGCGGCCCAGGTTGCTCAAAAAACTATTAAGAGAGGTGGAGCTCTGCGTGTAACATGCCTTGC AGAAAAAATCCTGGTCGCAAACAGAGGAGAAATTGCTGTTCGTGTGATACGAACTGCCCATGAATTAGGAATACCATGTGTTGCTGTTTACTCAACCATC GACAAGGATTCCCTTCATGTAAAATTGGCTGATGAATCAGTTTGCATTGGTGAAGCACCAAGCAATCAATCGTACTTAGTGATAGCCAATGTCTTGTCTG CTGCTGTAAGTCGTGGATGTACAATGCTGCATCCTGGATATGGTTTCCTTGCTGAGAATGCCACATTTGTTGAAATGTGTCGAGCACACGGAATAAATTT TATTGGACCAAATCCAGATAGCATCAAAACTATGGGAGATAAATCGACTGCCAGAGAAACAATGAAGAATGCAGGAGTTCCAACTGTTCCAGGAAGTGAT GGATTGTTGCAGAGCACAGAGGAAGCAATTAGGCTGGCTGAAGAAATTGGTTATCCTGTGATGATCAAGGCAACCGCTGGTGGGGGTGGGCGTGGACGGG GTGTGGGCAAACAACCAGCTGCATTTGTGATTCATGAGCATGCATACCAAGAAACAACAGAAGTCTTGGAAACAAAATTACAACAAGCCAAGAGCGAGGC TGCTGCTGCATTTGGAAATGATGGAGTTTATTTAGAAAAATACATTCAAAATCCAAGGCACATCGAGTTCCAGGTCCTTGCAGATAAGTATGGTAATGTC ATCCATTTTGGGGAGAGAGACTGCAGTATCCAGAGGCGTAACCAGAAGCTACTGGAAGAGGCTCCCTCTCCAGCAGCTGTGGGGAGGTGCCTCCCCCCCA GGCTTTGCCCACAGTTTGGAGGAACCCCTTGGCTTATAGTTTGGGCCCCGACTAGAGAAAAGGCGATTGAGCGTATGAAGAGGGCCCTTGATGACACTAT TATTACAGGAGTTCCTACAACAATTGATTATCATAAGTTGATCCTTAACATTGAGGACTTCAAAACTGGAAACGTCGATACAGCATTCATTCCAAAGCAC GAAGATGAGTTACAAGCGCCAACCCAGATAGTGCCAGCAAACGGAGTGGCCGCTTAA
AA sequence Show only first row Show all	>Lus10042901 pacid=23181674 polypeptide=Lus10042901 locus=Lus10042901.g ID=Lus10042901.BGIv1.0 annot-version=v1.0 MEATLPACKSGTSVPGLLLRTTPGIRSSQCSFLVGTKVNFPRQRAHAAQVAQKTIKRGGALRVTCLAEKILVANRGEIAVRVIRTAHELGIPCVAVYSTI DKDSLHVKLADESVCIGEAPSNQSYLVIANVLSAAVSRGCTMLHPGYGFLAENATFVEMCRAHGINFIGPNPDSIKTMGDKSTARETMKNAGVPTVPGSD GLLQSTEEAIRLAEEIGYPVMIKATAGGGGRGRGVGKQPAAFVIHEHAYQETTEVLETKLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNV IHFGERDCSIQRRNQKLLEEAPSPAAVGRCLPPRLCPQFGGTPWLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILNIEDFKTGNVDTAFIPKH EDELQAPTQIVPANGVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	0	1
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	1.0	0.9008
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	2.0	0.8674
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	2.2	0.8627
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	2.8	0.8700
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	3.0	0.8695
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	8.0	0.8363
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10035510 [exp]	8.7	0.7975
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	9.1	0.7655
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	9.2	0.8569
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	10.4	0.8155

Compare expression of checked genes

Lus10042901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.