Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G47330 362 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) AT4G17483 348 / 4e-120 alpha/beta-Hydrolases superfamily protein (.1) AT4G17480 343 / 5e-118 alpha/beta-Hydrolases superfamily protein (.1) AT5G47340 335 / 2e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G17470 328 / 6e-112 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G47350 305 / 1e-102 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028200 [exp] 675 / 0 AT3G60340 439 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004375 [exp] 395 / 7e-138 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040173 [exp] 386 / 1e-134 AT3G60340 409 / 4e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004757 [exp] 288 / 4e-92 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137200 [exp] 445 / 2e-157 AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G080100 [exp] 427 / 1e-149 AT3G60340 434 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G154600 [exp] 424 / 8e-149 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02089 [flax] [poplar] Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence Show only first row Show all	>Lus10042902 pacid=23181987 polypeptide=Lus10042902 locus=Lus10042902.g ID=Lus10042902.BGIv1.0 annot-version=v1.0 ATGGGCTCCGAAAAATTCCCCGCCGTCTTCAGCTTCCTCGCCTATGCCCTCGTGGCCTTCAACCCTGGCATTCCACTCGTCTCTTCTCTTCCGTTCGTCG TATTCCATGGTATTGGTGATAAATGTGGTAACAGAGGAATTTCGCAATTCGTTGAGTTATTAAGTCATTGGTCTGGCTCACAAGGATACTGCCTAGAGAT TGGAGATGGAGCTTGGGATTCTTGGACTATGCCCCTTCTAAATCAGACGGATATTGCTTGCGAGAAGGTGAAGAAGATGAGTGAACTCAGCAATGGTTAC AACATAGTTGGTCTTTCTCAGGGTAACTTAGTTGGACGTGGGATTGTTGAACTTTGTGATGGAGGCCCTCCCGTGAGAAATCTTGTGTCTCTGGGTGGTC CTCATGCCGGTACTGCTTCAGTCCCAATGTGCGGAGTAGGTGTAACTGACTCGTCTGGAATTATATGCATTATTCTGGACGCCTTGCTCAAACTAGAGAT ATACAGCAACTATGTTCAGGAACATTTGGCTCCAAGTGGTTATCTCAAAATTCCCACGGATATGGATGATTACATGAAAGGCTGTAGATTTCTCCCCAAA CTAAACAATGAAATCCAAAGCCTCAGAAATGATAATTATAGGGAGAGGCTTACAAGCTTGGAGAATTTAGTGTTGATCATGTTTGATCAGGACACAATTT TGATACCAAAAGAAACCGCATGGTTTGGATACTACCCCGATGGCACCTTTGGTACTATACTGCCTGTGAACGAGACTAAGCTTTACGTTGAAGACTGGAT TGGATTGAGAACATTAGACGAAGCAGAGAAAGTGAAGTTTGTTACCATGTCTGGAAATCATCTTGAAATCTCTGAAAGTGATATGAGAAAGTATATCGTA CCGTACATACAAGACAAAGCTTCGTTGAAGATGGTCGTAGCACAACAATCTCCTTCATTCCCTCTGCAGTGGGTTTCAGCAGCCCAAGAGATGCTGCTGG GACTAATAGGCGGGCTAACACAAGCACACCCCCCCCAGCCAATTCTGAAGATTGTCTCTTGA
AA sequence Show only first row Show all	>Lus10042902 pacid=23181987 polypeptide=Lus10042902 locus=Lus10042902.g ID=Lus10042902.BGIv1.0 annot-version=v1.0 MGSEKFPAVFSFLAYALVAFNPGIPLVSSLPFVVFHGIGDKCGNRGISQFVELLSHWSGSQGYCLEIGDGAWDSWTMPLLNQTDIACEKVKKMSELSNGY NIVGLSQGNLVGRGIVELCDGGPPVRNLVSLGGPHAGTASVPMCGVGVTDSSGIICIILDALLKLEIYSNYVQEHLAPSGYLKIPTDMDDYMKGCRFLPK LNNEIQSLRNDNYRERLTSLENLVLIMFDQDTILIPKETAWFGYYPDGTFGTILPVNETKLYVEDWIGLRTLDEAEKVKFVTMSGNHLEISESDMRKYIV PYIQDKASLKMVVAQQSPSFPLQWVSAAQEMLLGLIGGLTQAHPPQPILKIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	0	1
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	2.4	0.8093
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	3.9	0.8173
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	6.9	0.7379
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	7.6	0.8155
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	9.6	0.7698
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	13.8	0.7294
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	14.7	0.7636
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	15.8	0.7481
AT2G14045			unknown protein		Lus10042548 [exp]	17.0	0.7168
AT3G46450			SEC14 cytosolic factor family ...		Lus10040845 [exp]	19.4	0.7244

Compare expression of checked genes

Lus10042902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.