Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60330 857 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT5G62670 845 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 835 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G07560 795 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 792 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 789 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT4G30190 786 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G57350 786 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G42640 778 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G24520 776 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001437 [exp] 1220 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10013483 [exp] 1115 / 0 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026093 [exp] 1107 / 0 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042445 [exp] 1102 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10040166 [exp] 1057 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1054 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1051 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042904 [exp] 1040 / 0 AT3G60330 976 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10028203 [exp] 948 / 0 AT5G62670 1226 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046300 [exp] 946 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.003G080500 [exp] 889 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 843 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 842 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.018G006000 [exp] 811 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G275000 [exp] 805 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 790 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 789 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 787 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 783 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10042903 pacid=23181912 polypeptide=Lus10042903 locus=Lus10042903.g ID=Lus10042903.BGIv1.0 annot-version=v1.0 ATGGGAATCCAGTCACTTGATGCTGTTATGAAAGAAACAGTTGATCTGGAAAATGCACCCATGGAAGAAGTGTTTGAGCATCTCAAGTGTACCAGAGATG GTTTGAGCTCTGATGATATTCAACAAAGATTGGAGCTTTTCGGACACAACAAGCTTGAAGAGAAGAAGGAAAGTAAATTACTCAAGTTCTTGGGGTTTAT GTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCCCTCATGGCCATCGCTCTTGCTCATGGAGGGGGGAAGAGTCCAGATTACCATGACTTTGTTGGT ATCATTGTCCTGCTCATCATCAACTCCACCATCAGTTTCATAGAGGAAAACAATGCTGGCAATGCTGCTGCAGCTCTCATGGCTCAATTGTCACCAAAGG CCAGAGTTCTCCGCAATGGCAGATGGAGCGAGGAAGATGCTGCGATTTTAGTACCTGGAGACATTATCAGCATCAAGCTCGGTGATATCGTTCCAGCTGA TGCTCGCCTTCTTGAAGGAGATCCTTTAAAGATTGATCAGGCTGCTCTTACCGGAGAATCGCTTCCAGTGACCAAGAATCCAGGAAGTGGAGTTTATTCT GGTTCAACCTGCAAGCAAGGGGAAATAGATGCAGTGGTTATTGCAACAGGAGTCCATACATTCTTTGGAAAAGCAGCTCATCTTGTTGACAGTACAAACA ATGTTGGCCATTTCCAGCAGGTTTTGACAGCAATCGGAAACTTCTGCATTTGTTCCATTGCTGTTGGTATGGTTATAGAAATAGTGGTAATTTATGGGCT GCAAAAGAGAGCATACCGAGTTGGGATTGATAATCTACTGGTTCTACTAATCGGTGGGATCCCAATTGCTATGCCAACAGTTCTGTCAGTCACAATGGCC ATTGGATCACATCGCTTGTCTCAGCAGGCACGAGCTGGGGTTAGAGAGATTCACTTCCTCCCCTTCAATCCAACTGACAAAAGGACTGCCCTGACATATT TGGATGCCAATGGCAAAATGCATAGAGTTAGCAAAGGTGCACCAGAACAGATTCTCAACCTGGCATATAACAAATCAGAAATCGCCAGTAAGGTTCATGC GATCATCGACAAATTTGCAGAACGCGGATTGAGATCCCTTGGAGTTGCCCACCAGCAAGTTCCTAACGGGGATAAGGACAGCACAGGTGGACCATGGGAA TTTGTTGGCCTCCTACCCCTCTTCGACCCTCCTCGTCATGACAGTGCTGAAACAATTAGAAGAGCTTTAGATCTAGGCGTCAGTGTTAAAATGATTACAG GTGACCAGCTAGCCATTGGCAAAGAGACAGGAAGGAGGCTTGGAATGGGAACAAATATGTATCCATCTACAGCTCTGCTTGGTGAGGGTGGCAATGAAGC AACCGGCTCTCTACCTATTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGAGTGTTCCCAGAACATAAGTACGAGATTGTGAGGAGACTTCAAGCC AGAAAGCATATTTGTGGAATGACAGGAGATGGGGTGAACGATGCACCTGCTCTCAAGAAAGCCGACATTGGTATTGCTGTGGCGGATTCCACTGATGCAG CAAGAAGCGCTTCTGATATAGTCCTGACAGAACCTGGTCTCAGCGTCATCATTAGTGCTGTCTTGACTAGCCGCTCCATCTTCCAGAGAATGAAGAATTA CACAATTTATGCAGTATCAATCACCATCCGTATAGTGCTAGGATTCATGTTGCTGACTTGCTTCTGGAAATTCGACTTCCCGCCGTTCATGGTCCTTGTC ATTGCCATTCTTAATGATGGAACAATCATGACCATATCCAAGGACAGAGTGAAGCCATCACCCGTCCCAGATAGCTGGAAGCTGAGTGAGATTTTCGCTA CTGGAATCGTCCTTGGTGGCTACATGGCCCTCATGACAGTCGTTTTCTTCTGGCTAGCTTATGAAACCAATTTCTTCTCGAAACACTTCCATGTAACGAG CTTCAACAATGAACACTATGACCTCACAAACAAAGCAGTTGCAGAGCAACTAAACCAGCAATTGGCATCAGCCGTGTACCTTCAAATAAGCACCATTAGT CAAGCTTTGATCTTCGTGACTCGGTCAAGGGGCTGGTCATTCCAGGAACGCCCTGGCTTTCTACTTGTCTTCGCCTTCTTAATAGCCCAACTGATTGCAA CGGTGATATCAGCGGAAGCAAACTGGGAATTCGCAGGAATAAGAAGCATAGGATGGGGTTGGACTGGAGCCATATGGGCTTTCAACATAGCGACTTACCT GCTTTTAGATCCCATCAAATTCATCGTCATGTACGCTCTCAGCGGCAGAGCATGGGGACTGGTTGTGGACAAGAGGACAGCGTTCAGCAGCAAAAAGGAC TTTGGAAGGGAAGAGAGGGAAGCGGCATGGGCAACGGAGCAGAGGACGCTTCATGGACTCCAAAACAATGGCGACTTGAGAATGTTCTCAGATAAAAGCA CTTACAGAGAGATGAGCCTCATGGCTGAGGAAGCCAAGAAACGAGCTGAGATGGCAAGAATGAGGGAGCTTCGCACTTTGAAAGGAAGAGTTGAATCGTT CGCCAAGCTAAGGGGTTTGGATATCGATTCCAAGAACAACAATTACACTCTCTGA
AA sequence Show only first row Show all	>Lus10042903 pacid=23181912 polypeptide=Lus10042903 locus=Lus10042903.g ID=Lus10042903.BGIv1.0 annot-version=v1.0 MGIQSLDAVMKETVDLENAPMEEVFEHLKCTRDGLSSDDIQQRLELFGHNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIALAHGGGKSPDYHDFVG IIVLLIINSTISFIEENNAGNAAAALMAQLSPKARVLRNGRWSEEDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGSGVYS GSTCKQGEIDAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMVIEIVVIYGLQKRAYRVGIDNLLVLLIGGIPIAMPTVLSVTMA IGSHRLSQQARAGVREIHFLPFNPTDKRTALTYLDANGKMHRVSKGAPEQILNLAYNKSEIASKVHAIIDKFAERGLRSLGVAHQQVPNGDKDSTGGPWE FVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSTALLGEGGNEATGSLPIDELIEKADGFAGVFPEHKYEIVRRLQA RKHICGMTGDGVNDAPALKKADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRSIFQRMKNYTIYAVSITIRIVLGFMLLTCFWKFDFPPFMVLV IAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIVLGGYMALMTVVFFWLAYETNFFSKHFHVTSFNNEHYDLTNKAVAEQLNQQLASAVYLQISTIS QALIFVTRSRGWSFQERPGFLLVFAFLIAQLIATVISAEANWEFAGIRSIGWGWTGAIWAFNIATYLLLDPIKFIVMYALSGRAWGLVVDKRTAFSSKKD FGREEREAAWATEQRTLHGLQNNGDLRMFSDKSTYREMSLMAEEAKKRAEMARMRELRTLKGRVESFAKLRGLDIDSKNNNYTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	0	1
					Lus10020900 [exp]	1.4	0.8891
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	1.4	0.8940
AT1G11070			unknown protein		Lus10038307 [exp]	3.2	0.8717
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	3.5	0.8831
					Lus10011017 [exp]	3.7	0.8679
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	4.2	0.8701
					Lus10014515 [exp]	6.6	0.8769
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	7.5	0.8085
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	7.5	0.8640
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	7.7	0.8495

Compare expression of checked genes

Lus10042903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.