Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60330 918 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT5G62670 892 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 880 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G07560 845 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 837 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G42640 836 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G80660 833 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 829 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G24520 829 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT4G30190 825 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042903 [exp] 1045 / 0 AT3G60330 918 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 962 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 959 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10028201 [exp] 945 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10003259 [exp] 891 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 891 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10028203 [exp] 846 / 0 AT5G62670 1226 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10001631 [exp] 839 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 838 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046300 [exp] 1003 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.003G080500 [exp] 947 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 890 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 889 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G275000 [exp] 857 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 853 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 844 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 844 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 842 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 837 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10042904 pacid=23181850 polypeptide=Lus10042904 locus=Lus10042904.g ID=Lus10042904.BGIv1.0 annot-version=v1.0 ATGGTTGTGCTCATGGCTGCCAGAGCATCAAGGCTGGAGAACCAGGATGCTATTGATACTGCAATTGTTGCCATGTTGGGTGATCCTAAGGAGGCACGAG CTGGGATTAGAGAGATCCACTTCCTCCCCTTCAATCCAACTGACAAAAGGACTGCCCTGACATATTTGGATGCGGATAGTAGAATGCACAGGGTTAGCAA AGGTGCACCAGAACAAATTCTTAACCTGGCACATAACAAAGCAGAGATTGCCAACAAGGTCCATGGAATCATTGACAAATTCGCAGAACGTGGACTGAGA TCCCTTGGAATTGCCCGCCAGCAAGTTCCTAATGGGGATAAGGACAGCTCAGGAGGGCCCTGGGAATTTGTCGGCCTCCTACCCCTGTTCGACCCTCCTC GCCATGACAGCGCTGAAACGATCAGAAGAGCTTTGGATTTAGGAGTCAGTGTTAAGATGATTACAGGTGATCAGCTAGCCATTGGCAAGGAGACAGGAAG AAGGCTTGGAATGGGAACAAATATGTACCCATCTACAGCTCTGCTTGGTGATGGTGACAATGAGGCAGTTGGCTCTCTCCCCATTGATGAACTCATTGAG AAAGCTGATGGCTTTGCTGGAGTGTTCCCTGAGCATAAGTACGAGATTGTGAGGAGACTTCAAGCCAGAAAGCATATTTGCGGAATGACAGGAGATGGGG TGAATGATGCACCTGCTCTGAAGAAAGCCGACATTGGTATTGCTGTGGCGGATTCCACTGATGCAGCAAGAAGCGCTTCTGATATTGTCCTGACAGAACC TGGTCTCAGTGTTATCATTAGTGCTGTCTTGACTAGCCGCTCCATCTTCCAGAGAATGAAGAATTACACAATTTATGCAGTGTCCATCACCATCCGTATA GTGCTAGGATTCATGTTGCTGACTTGCTTCTGGAAATTCGACTTCCCACCTTTCATGGTCCTTGTCATTGCCATTCTTAACGACGGAACAATCATGACCA TATCCAAGGACAGAGTGAAGCCATCACCCGTCCCAGATAGCTGGAAGCTGAGCGAGATTTTCGCTACTGGAATCGTCCTTGGTGGCTACATGGCCCTCAT GACAGTCGTTTTCTTCTGGCTAGCTTATGAAACCAATTTCTTCTCGAAACACTTCCATGTAAAGAGCTTCAACAATGAACACTACGACCTCACAAACAAA GTAGTGGCGGATCAGCTAAACCAGCAATTGGCATCAGCCCTGTATCTGCAAATAAGCACCATTAGCCAAGCTTTGATCTTCGTGACCCGGTCAAGGGGCT GGTCATTCCAGGAACGCCCTGGCTTTCTACTAGTCTTTGCTTTCTTAATAGCCCAACTGATCGCAACTGTGATATCGGCGGAAGCAAACTGGGAATTTGC AGGAATAAGAAGCATAGGATGGGGTTGGACTGGAGCCATATGGGTTTTCAACATTGTGACTTACCTGCTTTTAGATCCCATCAAATTCGTCGTGATGTAC GCTCTTAGCGGCCGAGCCTGGGGACTCGTTGTCGACAAAAGGACTGCGCTGACTAACAAGAAGAACTTCGGAAGGGAAGAGAGGGAAGCGGCGTGGGCGA CAGAGCAGAGGACAATCCACGGCCTTCAGAGCGATACCGAAAAGAGCACTTACAGGGAGATTAGCTTGATGGCTGAAGAAGCCAGAAAACGTGCTGAGAT CGCAAGAATGAGGGAACTTCACACTTTGAAAGGAAGGGTTGAGTCGTTCGCCAAACTGAAGGGATATGATATCGACTCCATGAACCAGCATTACACTCTC TGA
AA sequence Show only first row Show all	>Lus10042904 pacid=23181850 polypeptide=Lus10042904 locus=Lus10042904.g ID=Lus10042904.BGIv1.0 annot-version=v1.0 MVVLMAARASRLENQDAIDTAIVAMLGDPKEARAGIREIHFLPFNPTDKRTALTYLDADSRMHRVSKGAPEQILNLAHNKAEIANKVHGIIDKFAERGLR SLGIARQQVPNGDKDSSGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSTALLGDGDNEAVGSLPIDELIE KADGFAGVFPEHKYEIVRRLQARKHICGMTGDGVNDAPALKKADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRSIFQRMKNYTIYAVSITIRI VLGFMLLTCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFATGIVLGGYMALMTVVFFWLAYETNFFSKHFHVKSFNNEHYDLTNK VVADQLNQQLASALYLQISTISQALIFVTRSRGWSFQERPGFLLVFAFLIAQLIATVISAEANWEFAGIRSIGWGWTGAIWVFNIVTYLLLDPIKFVVMY ALSGRAWGLVVDKRTALTNKKNFGREEREAAWATEQRTIHGLQSDTEKSTYREISLMAEEARKRAEIARMRELHTLKGRVESFAKLKGYDIDSMNQHYTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	0	1
					Lus10039025 [exp]	1.0	0.9556
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	2.0	0.9495
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	2.8	0.9263
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013581 [exp]	3.0	0.9229
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	4.2	0.9406
AT1G10800			unknown protein		Lus10037441 [exp]	4.5	0.9380
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	4.9	0.9173
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	5.1	0.9026
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	5.9	0.9317
					Lus10031873 [exp]	6.3	0.9365

Compare expression of checked genes

Lus10042904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.