Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60330 442 / 7e-149 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT5G62670 431 / 9e-145 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 426 / 2e-142 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G42640 412 / 3e-137 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G80660 410 / 1e-136 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 407 / 1e-135 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G07560 403 / 7e-134 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 402 / 1e-133 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G18960 397 / 2e-131 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G24520 376 / 1e-123 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028201 [exp] 520 / 2e-180 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10042903 [exp] 519 / 1e-179 AT3G60330 918 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10028203 [exp] 476 / 6e-163 AT5G62670 1226 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10002325 [exp] 402 / 4e-141 AT2G07560 564 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10003259 [exp] 416 / 1e-138 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 416 / 1e-138 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10004370 [exp] 413 / 2e-137 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10001437 [exp] 406 / 8e-136 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10013483 [exp] 406 / 9e-136 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046300 [exp] 438 / 3e-147 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.003G080500 [exp] 436 / 3e-146 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 426 / 1e-142 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G005900 [exp] 425 / 2e-142 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.012G071600 [exp] 422 / 3e-141 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.018G112400 [exp] 418 / 2e-139 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 414 / 5e-138 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 412 / 2e-137 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G090300 [exp] 412 / 2e-137 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 409 / 4e-136 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus
Representative CDS sequence Show only first row Show all	>Lus10042905 pacid=23181993 polypeptide=Lus10042905 locus=Lus10042905.g ID=Lus10042905.BGIv1.0 annot-version=v1.0 ATGGGAATCCAGTCACTTGATGCTGTGATGAAAGAATCAGTTGATCTGGAAAATGCACCTATGGAAGAAGTGTTTGAGCATCTCAAGTGTACCAGAGATG GTCTCAGCTCTGATGATATTCAACAAAGATTGGAGCTTTTTGGACACAACAAACTTGAAGAGAAGAAGGAAAGTAAATTACTCAAGTTCTTGGGGTTTAT GTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCCCTCATGGCCATCGCTCTTGCTCATGGAGGGGGGAAGAGTCCAGATTACCATGATTTTGTTGGT ATCATTGTGCTGCTCATCATCAACTCCACCATCAGTTTCATAGAGGAAAACAATGCTGGCAATGCTGCTGCTGCTCTCATGGCTCAGTTGTCACCAAAGG CCAGAGTTCTCCGCAATGGAAAATGGAGCGAGGAAGATGCTGCAATTTTAGTACCTGGAGATATTATCAGCATCAAGCTCGGTGATATAGTTCCAGCTGA TGCTCGCCTTCTTGAAGGAGATCCTTTAAAGATTGATCAGAAACTTATCTTGACAACGTTTGCAGGCTGCTCTTACCGGAGAATCACTTCCAGTGACCAA GAATCGCTTCCAGTGACCAAAAATCCAGGAAGTGGAGTTTACTCTGGTTCAACCTGCAAGCAAGGGGAAATAGATGCAGTGGTTATTGCAACAGGAGTCC ATACATTCTTTGGAAAAGCAGCTCATCTTGTTGACAGTACAAACAATGTTGGCCATTTCCAGCAGGTTTTGACAGCAATCGGAAACTTCTGCATTTGTTC CATTGCTGTTGGTATGGTTATAGAAATTGTGGTGATTTATGGCCTACAAAAGAGAGCATACCGAGTCGGGATTGATAATCTACTTGTTCTACTAATCGGC GGGATCCCAATTGCTATGCCAACTGTTCTGTCAGTCACAATGGCCATTTGA
AA sequence Show only first row Show all	>Lus10042905 pacid=23181993 polypeptide=Lus10042905 locus=Lus10042905.g ID=Lus10042905.BGIv1.0 annot-version=v1.0 MGIQSLDAVMKESVDLENAPMEEVFEHLKCTRDGLSSDDIQQRLELFGHNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIALAHGGGKSPDYHDFVG IIVLLIINSTISFIEENNAGNAAAALMAQLSPKARVLRNGKWSEEDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQKLILTTFAGCSYRRITSSDQ ESLPVTKNPGSGVYSGSTCKQGEIDAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMVIEIVVIYGLQKRAYRVGIDNLLVLLIG GIPIAMPTVLSVTMAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	0	1
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	1.0	0.9716
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	1.4	0.9600
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	1.7	0.9539
					Lus10018313 [exp]	2.2	0.9445
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	4.0	0.9500
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	4.9	0.9434
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	4.9	0.9355
					Lus10033601 [exp]	5.2	0.9334
AT4G35980			unknown protein		Lus10028436 [exp]	5.3	0.9208
AT4G35905			unknown protein		Lus10041873 [exp]	5.8	0.9184

Compare expression of checked genes

Lus10042905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.